Книга: Запутанная жизнь. Как грибы меняют мир, наше сознание и наше будущее
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Aanen DK, Eggleton P, Rouland-Lefevre C, Guldberg-Froslev T, Rosendahl S, Boomsma JJ. 2002. The evolution of fungus-growing termites and their mutualistic fungal symbionts. Proceedings of the National Academy of Sciences 99: 14887–892.
Aasved MJ. 1988. Alcohol, drinking, and intoxication in preindustrial societies: Theoretical, nutritional, and religious considerations. PhD thesis, University of California at Santa Barbara.
Abadeh A, Lew RR. 2013. Mass flow and velocity profiles in Neurospora hyphae: partial plug flow dominates intra-hyphal transport. Microbiology 159: 2386–394.
Achatz M, Rillig MC. 2014. Arbuscular mycorrhizal fungal hyphae enhance transport of the allelochemical juglone in the field. Soil Biology and Biochemistry 78: 76–82.
Adachi K, Chiba K. 2007. FTY720 story. Its discovery and the following accelerated development of sphingosine 1-phosphate receptor agonists as immunomodulators based on reverse pharmacology. Perspectives in Medicinal Chemistry 1: 11–23.
Adamatzky A. 2016. Advances in Physarum Machines. Springer International Publishing.
Adamatzky A. 2019. A brief history of liquid computers. Philosophical Transactions of the Royal Society B 374: 20180372.
Adamatzky A. 2018a. On spiking behaviour of oyster fungi Pleurotus djamor. Scientific Reports 8: 7873.
Adamatzky A. 2018b. Towards fungal computer. Journal of the Royal Society Interface Focus 8: 20180029.
Ahmadjian V. 1995. Lichens are more important than you think. BioScience 45: 123.
Ahmadjian V, Heikkilä H. 1970. The culture and synthesis of Endocarpon pusillum and Staurothele clopima. The Lichenologist 4: 259–67.
Ainsworth GC. 1976. Introduction to the History of Mycology. Cambridge, UK: Cambridge University Press.
Albert R, Jeong H, Barabási A-L. 2000. Error and attack tolerance of complex networks. Nature 406: 378–82.
Alberti S. 2015. Don’t go with the cytoplasmic flow. Developmental Cell 34: 381–82.
Alim K. 2018. Fluid flows shaping organism morphology. Philosophical Transactions of the Royal Society B 373: 20170112.
Alim K, Andrew N, Pringle A, Brenner MP. 2017. Mechanism of signal propagation in Physarum polycephalum. Proceedings of the National Academy of Sciences 114: 5136–141.
Allaway W, Ashford A. 2001. Motile tubular vacuoles in extramatrical mycelium and sheath hyphae of ectomycorrhizal systems. Protoplasma 215: 218–25.
Allen J, Arthur J. 2005. “Ethnomycology and Distribution of Psilocybin Mushrooms.” In Sacred Mushroom of Visions: Teonanacatl. Metzner R, ed. Rochester, VT: Park Street Press, pp. 49–68.
Alpert C. 2011. Unraveling the Mysteries of the Canadian Whiskey Fungus. Wired: www.wired.com/2011/05/ff-angelsshare/ [accessed October 29, 2019].
Alpi A, Amrhein N, Bertl A, Blatt MR, Blumwald E, Cervone F, Dainty J, Michelis M, Epstein E, Galston AW, et al. 2007. Plant neurobiology: no brain, no gain? Trends in Plant Science 12: 135–36.
Aly A, Debbab A, Proksch P. 2011. Fungal endophytes: unique plant inhabitants with great promises. Applied Microbiology and Biotechnology 90: 1829–845.
Alzarhani KA, Clark DR, Underwood GJ, Ford H, Cotton AT, Dumbrell AJ. 2019. Are drivers of root-associated fungal community structure context specific? The ISME Journal 13: 1330–344.
Anderson JB, Bruhn JN, Kasimer D, Wang H, Rodrigue N, Smith ML. 2018. Clonal evolution and genome stability in a 2500-year-old fungal individual. Proceedings of the Royal Society B 285: 20182233.
Andersen SB, Gerritsma S, Yusah KM, Mayntz D, Hywel Jones NL, Billen J, Boomsma JJ, Hughes DP. 2009. The life of a dead ant: the expression of an adaptive extended phenotype. The American Naturalist 174: 424–33.
Araldi-Brondolo SJ, Spraker J, Shaffer JP, Woytenko EH, Baltrus DA, Gallery RE, Arnold EA. 2017. Bacterial endosymbionts: master modulators of fungal phenotypes. Microbiology spectrum 5: FUNK-0056-2016.
Arnaud-Haond S, Duarte CM, Diaz-Almela E, Marbà N, Sintes T, Serrão EA. 2012. Implications of extreme life span in clonal organisms: millenary clones in meadows of the threatened seagrass Posidonia oceanica. PLOS ONE 7: e30454.
Arnold EA, Mejía L, Kyllo D, Rojas EI, Maynard Z, Robbins N, Herre E. 2003. Fungal endophytes limit pathogen damage in a tropical tree. Proceedings of the National Academy of Sciences 100: 15649–654.
Arnold EA, Miadlikowska J, Higgins LK, Sarvate SD, Gugger P, Way A, Hofstetter V, Kauff F, Lutzoni F. 2009. A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification? Systematic Biology 58: 283–97.
Arsenault C. 2014. Only 60 Years of Farming Left if Soil Degradation Continues. Scientific American: www.scientificamerican.com/article/only-60-years-of-farming-left-if-soil-degradation-continues/ [accessed October 29, 2019].
Aschenbrenner IA, Cernava T, Berg G, Grube M. 2016. Understanding microbial multi-species symbioses. Frontiers in Microbiology 7: 180.
Asenova E, Lin H-Y, Fu E, Nicolau DV, Nicolau DV. 2016. Optimal fungal space searching algorithms. IEEE Transactions on NanoBioscience 15: 613–18.
Ashford AE, Allaway WG. 2002. The role of the motile tubular vacuole system in mycorrhizal fungi. Plant and Soil 244: 177–87.
Averill C, Dietze MC, Bhatnagar JM. 2018. Continental-scale nitrogen pollution is shifting forest mycorrhizal associations and soil carbon stocks. Global Change Biology 24: 4544–553.
Awan AR, Winter JM, Turner D, Shaw WM, Suz LM, Bradshaw AJ, Ellis T, Dentinger B. 2018. Convergent evolution of psilocybin biosynthesis by psychedelic mushrooms. bioRxiv: 374199.
Babikova Z, Gilbert L, Bruce TJ, Birkett M, Caulfield JC, Woodcock C, Pickett JA, Johnson D. 2013. Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters 16: 835–43.
Bachelot B, Uriarte M, McGuire KL, Thompson J, Zimmerman J. 2017. Arbuscular mycorrhizal fungal diversity and natural enemies promote coexistence of tropical tree species. Ecology 98: 712–20.
Bader MK-F, Leuzinger S. 2019. Hydraulic coupling of a leafless kauri tree remnant to conspecific hosts. iScience 19: 1238-43.
Bahn Y-S, Xue C, Idnurm A, Rutherford JC, Heitman J, Cardenas ME. 2007. Sensing the environment: lessons from fungi. Nature Reviews Microbiology 5: 57–69.
Bain N, Bartolo D. 2019. Dynamic response and hydrodynamics of polarized crowds. Science 363: 46–49.
Ball P. 2019. How to Grow a Human. London, UK: William Collins.
Banerjee S, Schlaeppi K, van der Heijden MG. 2018. Keystone taxa as drivers of microbiome structure and functioning. Nature Reviews Microbiology 16: 567–76.
Banerjee S, Walder F, Büchi L, Meyer M, Held AY, Gattinger A, Keller T, Charles R, van der Heijden MG. 2019. Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME Journal 13: 1722–736.
Barabási A-L. 2014. Linked: How Everything Is Connected to Everything Else and What It Means for Business, Science, and Everyday Life. New York, NY: Basic Books.
Barabási A-L. 2001. The Physics of the Web. Physics World 14: 33–38. physicsworld.com/a/the-physics-of-the-web/ [accessed October 29, 2019].
Barabási A-L, Albert R. 1999. Emergence of scaling in random networks. Science 286: 509–12.
Barbey AK. 2018. Network neuroscience theory of human intelligence. Trends in Cognitive Sciences 22: 8–20.
Bar-On YM, Phillips R, Milo R. 2018. The biomass distribution on Earth. Proceedings of the National Academy of Sciences 115: 6506–511.
Barto KE, Hilker M, Müller F, Mohney BK, Weidenhamer JD, Rillig MC. 2011. The fungal fast lane: common mycorrhizal networks extend bioactive zones of allelochemicals in soils. PLOS ONE 6: e27195.
Barto KE, Weidenhamer JD, Cipollini D, Rillig MC. 2012. Fungal superhighways: do common mycorrhizal networks enhance below ground communication? Trends in Plant Science 17: 633–37.
Bascompte J. 2009. Mutualistic networks. Frontiers in Ecology and the Environment 7: 429–36.
Baslam M, Garmendia I, Goicoechea N. 2011. Arbuscular mycorrhizal fungi (AMF) improved growth and nutritional quality of greenhouse-grown lettuce. Journal of Agricultural and Food Chemistry 59: 5504–515.
Bass D, Howe A, Brown N, Barton H, Demidova M, Michelle H, Li L, Sanders H, Watkinson SC, Willcock S, et al. 2007. Yeast forms dominate fungal diversity in the deep oceans. Proceedings of the Royal Society B 274: 3069–77.
Bassett DS, Sporns O. 2017. Network neuroscience. Nature Neuroscience 20: 353–64.
Bassett E, Keith MS, Armelagos G, Martin D, Villanueva A. 1980. Tetracycline-labeled human bone from ancient Sudanese Nubia (A.D. 350). Science 209: 1532–534.
Bateson B. 1928. William Bateson, Naturalist. Cambridge, UK: Cambridge University Press.
Bateson G. 1987. Steps to an Ecology of Mind. Northvale, NJ: Jason Aronson Inc.
Bebber DP, Hynes J, Darrah PR, Boddy L, Fricker MD. 2007. Biological solutions to transport network design. Proceedings of the Royal Society B 274: 2307–315.
Beck A, Divakar P, Zhang N, Molina M, Struwe L. 2015. Evidence of ancient horizontal gene transfer between fungi and the terrestrial alga Trebouxia. Organisms Diversity & Evolution 15: 235–48.
Beerling D. 2019. Making Eden. Oxford, UK: Oxford University Press.
Beiler KJ, Durall DM, Simard SW, Maxwell SA, Kretzer AM. 2009. Architecture of the wood-wide web: Rhizopogon spp. genets link multiple Douglas-fir cohorts. New Phytologist 185: 543–53.
Beiler KJ, Simard SW, Durall DM. 2015. Topology of tree-mycorrhizal fungus interaction networks in xeric and mesic Douglas-fir forests. Journal of Ecology 103: 616–28.
Bengtson S, Rasmussen B, Ivarsson M, Muhling J, Broman C, Marone F, Stampanoni M, Bekker A. 2017. Fungus-like mycelial fossils in 2.4-billion-year-old vesicular basalt. Nature Ecology & Evolution 1: 0141.
Bennett JA, Cahill JF. 2016. Fungal effects on plant – plant interactions contribute to grassland plant abundances: evidence from the field. Journal of Ecology 104: 755–64.
Bennett JA, Maherali H, Reinhart KO, Lekberg Y, Hart MM, Klironomos J. 2017. Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics. Science 355: 181–84.
Bennett JW, Chung KT. 2001. Alexander Fleming and the discovery of penicillin. Advances in Applied Microbiology 49: 163–84.
Berendsen RL, Pieterse CM, Bakker PA. 2012. The rhizosphere microbiome and plant health. Trends in Plant Science 17: 478–86.
Bergson H. 1911. Creative Evolution. New York, NY: Henry Holt and Company.
Berthold T, Centler F, Hübschmann T, Remer R, Thullner M, Harms H, Wick LY. 2016. Mycelia as a focal point for horizontal gene transfer among soil bacteria. Scientific Reports 6: 36390.
Bever JD, Richardson SC, Lawrence BM, Holmes J, Watson M. 2009. Preferential allocation to beneficial symbiont with spatial structure maintains mycorrhizal mutualism. Ecology Letters 12: 13–21.
Bingham MA, Simard SW. 2011. Mycorrhizal networks affect ectomycorrhizal fungal community similarity between conspecific trees and seedlings. Mycorrhiza 22: 317–26.
Björkman E. 1960. Monotropa Hypopitys L. – an Epiparasite on Tree Roots. Physiologia Plantarum 13: 308–27.
Boddy L, Hynes J, Bebber DP, Fricker MD. 2009. Saprotrophic cord systems: dispersal mechanisms in space and time. Mycoscience 50: 9–19.
Bonfante P. 2018. The future has roots in the past: the ideas and scientists that shaped mycorrhizal research. New Phytologist 220: 982–95.
Bonfante P, Desirò A. 2017. Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota. The ISME Journal 11: 1727–735.
Bonfante P, Selosse M-A. 2010. A glimpse into the past of land plants and of their mycorrhizal affairs: from fossils to evo-devo. New Phytologist 186: 267–70.
Bonifaci V, Mehlhorn K, Varma G. 2012. Physarum can compute shortest paths. Journal of Theoretical Biology 309: 121–33.
Booth MG. 2004. Mycorrhizal networks mediate overstorey-understorey competition in a temperate forest. Ecology Letters 7: 538–46.
Bordenstein SR, Theis KR. 2015. Host biology in light of the microbiome: ten principles of holobionts and hologenomes. PLOS Biology 13: e1002226.
Bouchard F. 2018. “Symbiosis, Transient Biological Individuality, and Evolutionary Process.” In Everything Flows: Towards a Processual Philosophy of Biology. Dupré J, Nicholson J, eds. Oxford, UK: Oxford University Press, pp. 186–98.
Boulter M. 2010. Darwin’s Garden: Down House and the Origin of Species. Berkeley, CA: Counterpoint.
Boyce GR, Gluck-Thaler E, Slot JC, Stajich JE, Davis WJ, James TY, Cooley JR, Panaccione DG, Eilenberg J, Licht HH, et al. 2019. Psychoactive plant– and mushroom-associated alkaloids from two behavior modifying cicada pathogens. Fungal Ecology 41: 147–64.
Brand A, Gow NA. 2009. Mechanisms of hypha orientation of fungi. Current Opinion in Microbiology 12: 350–57.
Brandt A, de Vera JP, Onofri S, Ott S. 2014. Viability of the lichen Xanthoria elegans and its symbionts after 18 months of space exposure and simulated Mars conditions on the ISS. International Journal of Astrobiology 14: 411–25.
Brandt A, Meeßen J, Jänicke RU, Raguse M, Ott S. 2017. Simulated space radiation: impact of four different types of high-dose ionizing radiation on the lichen Xanthoria elegans. Astrobiology 17: 136–44.
Bringhurst R. 2009. Everywhere Being Is Dancing. Berkeley, CA: Counterpoint.
Brito I, Goss MJ, Alho L, Brígido C, van Tuinen D, Félix MR, Carvalho M. 2018. Agronomic management of AMF functional diversity to overcome biotic and abiotic stresses – the role of plant sequence and intact extraradical mycelium. Fungal Ecology 40: 72–81.
Bruce-Keller AJ, Salbaum MJ, Berthoud H-R. 2018. Harnessing gut microbes for mental health: getting from here to there. Biological Psychiatry 83: 214–23.
Bruggeman FJ, van Heeswijk WC, Boogerd FC, Westerhoff HV. 2000. Macromolecular Intelligence in Microorganisms. Biological Chemistry 381: 965–72.
Brundrett MC. 2002. Coevolution of roots and mycorrhizas of land plants. New Phytologist 154: 275–304.
Brundrett MC, Tedersoo L. 2018. Evolutionary history of mycorrhizal symbioses and global host plant diversity. New Phytologist 220: 1108–115.
Brunet T, Arendt D. 2015. From damage response to action potentials: early evolution of neural and contractile modules in stem eukaryotes. Philosophical Transactions of the Royal Society B 371: 20150043.
Brunner I, Fischer M, Rüthi J, Stierli B, Frey B. 2018. Ability of fungi isolated from plastic debris floating in the shoreline of a lake to degrade plastics. PLOS ONE 13: e0202047.
Bublitz DC, Chadwick GL, Magyar JS, Sandoz KM, Brooks DM, Mesnage S, Ladinsky MS, Garber AI, Bjorkman PJ, Orphan VJ, et al. 2019. Peptidoglycan Production by an Insect-Bacterial Mosaic. Cell 179: 1–10.
Buddie AG, Bridge PD, Kelley J, Ryan MJ. 2011. Candida keroseneae sp. nov., a novel contaminant of aviation kerosene. Letters in Applied Microbiology 52: 70–75.
Büdel B, Vivas M, Lange OL. 2013. Lichen species dominance and the resulting photosynthetic behavior of Sonoran Desert soil crust types (Baja California, Mexico). Ecological Processes 2: 6.
Buhner SH. 1998. Sacred Herbal and Healing Beers. Boulder, CO: Siris Books.
Buller, AHR. 1931. Researches on Fungi, vol. 4. London, UK: Longmans, Green, and Co.
Büntgen U, Egli S, Schneider L, von Arx G, Rigling A, Camarero JJ, Sangüesa-Barreda G, Fischer CR, Oliach D, Bonet JA, et al. 2015. Long-term irrigation effects on Spanish holm oak growth and its black truffle symbiont. Agriculture, Ecosystems & Environment 202: 148–59.
Burford EP, Kierans M, Gadd GM. 2003. Geomycology: fungi in mineral substrata. Mycologist 17: 98–107.
Burkett W. 1987. Ancient Mystery Cults. Cambride, MA: Harvard University Press.
Burr C. 2012. The Emperor of Scent. New York, NY: Random House.
Bushdid C, Magnasco M, Vosshall L, Keller A. 2014. Humans can discriminate more than 1 trillion olfactory stimuli. Science 343: 1370–372.
Cai Q, Qiao L, Wang M, He B, Lin F-M, Palmquist J, Huang S-D, Jin H. 2018. Plants send small RNAs in extracellular vesicles to fungal pathogen to silence virulence genes. Science 360: 1126–129.
Calvo Garzón P, Keijzer F. 2011. Plants: Adaptive behavior, root-brains, and minimal cognition. Adaptive Behavior 19: 155–71.
Campbell B, Ionescu R, Favors Z, Ozkan CS, Ozkan M. 2015. Bio-derived, binderless, hierarchically porous carbon anodes for Li-ion batteries. Scientific Reports 5: 14575.
Caporael L. 1976. Ergotism: the satan loosed in Salem? Science 192: 21–26.
Carhart-Harris RL, Bolstridge M, Rucker J, Day CM, Erritzoe D, Kaelen M, Bloomfield M, Rickard JA, Forbes B, Feilding A, et al. 2016a. Psilocybin with psychological support for treatment-resistant depression: an open-label feasibility study. The Lancet Psychiatry 3: 619–27.
Carhart-Harris RL, Erritzoe D, Williams T, Stone J, Reed LJ, Colasanti A, Tyacke RJ, Leech R, Malizia AL, Murphy K, et al. 2012. Neural correlates of the psychedelic state as determined by fMRI studies with psilocybin. Proceedings of the National Academy of Sciences 109: 2138–143.
Carhart-Harris RL, Muthukumaraswamy S, Roseman L, Kaelen M, Droog W, Murphy K, Tagliazucchi E, Schenberg EE, Nest T, Orban C, et al. 2016b. Neural correlates of the LSD experience revealed by multimodal neuroimaging. Proceedings of the National Academy of Sciences 113: 4853–858.
Carrigan MA, Uryasev O, Frye CB, Eckman BL, Myers CR, Hurley TD, Benner SA. 2015. Hominids adapted to metabolize ethanol long before human-directed fermentation. Proceedings of the National Academy of Sciences 112: 458–63.
Casadevall A. 2012. Fungi and the rise of mammals. Pathogens 8: e1002808.
Casadevall A, Cordero RJ, Bryan R, Nosanchuk J, Dadachova E. 2017. Melanin, Radiation, and Energy Transduction in Fungi. Microbiology Spectrum 5: FUNK-0037-2016.
Casadevall A, Kontoyiannis DP, Robert V. 2019. On the Emergence of Candida auris: Climate Change, Azoles, Swamps, and Birds. mBio 10: e01397-19.
Ceccarelli N, Curadi M, Martelloni L, Sbrana C, Picciarelli P, Giovannetti M. 2010. Mycorrhizal colonization impacts on phenolic content and antioxidant properties of artichoke leaves and flower heads two years after field transplant. Plant and Soil 335: 311–23.
Cepelewicz J. 2019. Bacterial Complexity Revises Ideas About “Which Came First?” Quanta: www.quantamagazine.org/bacterial-organelles-revise-ideas-about-which-came-first-20190612/ [accessed October 29, 2019].
Cerdá-Olmedo E. 2001. Phycomyces and the biology of light and color. FEMS Microbiology Reviews 25: 503–12.
Cernava T, Aschenbrenner I, Soh J, Sensen CW, Grube M, Berg G. 2019. Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota. The ISME Journal 13: 547–56.
Chen J, Blume H, Beyer L. 2000. Weathering of rocks induced by lichen colonization – a review. Catena 39: 121–46.
Chen L, Swenson NG, Ji N, Mi X, Ren H, Guo L, Ma K. 2019. Differential soil fungus accumulation and density dependence of trees in a subtropical forest. Science 366: 124–28.
Chen M, Arato M, Borghi L, Nouri E, Reinhardt D. 2018. Beneficial services of arbuscular mycorrhizal fungi – from ecology to application. Frontiers in Plant Science 9: 1270.
Chialva M, di Fossalunga A, Daghino S, Ghignone S, Bagnaresi P, Chiapello M, Novero M, Spadaro D, Perotto S, Bonfante P. 2018. Native soils with their microbiotas elicit a state of alert in tomato plants. New Phytologist 220: 1296–308.
Chrisafis A. 2010. French truffle farmer shoots man he feared was trying to steal “black diamonds.” The Guardian: www.theguardian.com/world/2010/dec/22/french-truffle-farmer-shoots-trespasser [accessed October 29, 2019].
Christakis NA, Fowler JH. 2009. Connected: The Surprising Power of Our Social Networks and How They Shape Our Lives. London, UK: HarperPress.
Chu C, Murdock MH, Jing D, Won TH, Chung H, Kressel AM, Tsaava T, Addorisio ME, Putzel GG, Zhou L, et al. 2019. The microbiota regulate neuronal function and fear extinction learning. Nature 574: 543–48.
Chung T-Y, Sun P-F, Kuo J-I, Lee Y-I, Lin C–C, Chou J-Y. 2017. Zombie ant heads are oriented relative to solar cues. Fungal Ecology 25: 22–28.
Cixous, H. 1991. The Book of Promethea. Lincoln, NE: University of Nebraska Press.
Claus R, Hoppen H, Karg H. 1981. The secret of truffles: A steroidal pheromone? Experientia 37: 1178–179.
Clay K. 1988. Fungal Endophytes of Grasses: A Defensive Mutualism between Plants and Fungi. Ecology 69: 10–16.
Clemmensen K, Bahr A, Ovaskainen O, Dahlberg A, Ekblad A, Wallander H, Stenlid J, Finlay R, Wardle D, Lindahl B. 2013. Roots and associated fungi drive long-term carbon sequestration in boreal forest. Science 339: 1615–618.
Cockell CS. 2008. The interplanetary exchange of photosynthesis. Origins of Life and Evolution of Biospheres 38: 87–104.
Cohen R, Jan Y, Matricon J, Delbrück M. 1975. Avoidance response, house response, and wind responses of the sporangiophore of Phycomyces. The Journal of General Physiology 66: 67–95.
Collier FA, Bidartondo MI. 2009. Waiting for fungi: the ectomycorrhizal invasion of lowland heathlands. Journal of Ecology 97: 950–63.
Collinge A, Trinci A. 1974. Hyphal tips of wild-type and spreading colonial mutants of Neurospora crassa. Archive of Microbiology 99: 353–68.
Cooke M. 1875. Fungi: Their Nature and Uses. New York, NY: D. Appleton and Company.
Cooley JR, Marshall DC, Hill KBR. 2018. A specialized fungal parasite (Massospora cicadina) hijacks the sexual signals of periodical cicadas (Hemiptera: Cicadidae: Magicicada). Scientific Reports 8: 1432.
Copetta A, Bardi L, Bertolone E, Berta G. 2011. Fruit production and quality of tomato plants (Solanum lycopersicum L.) are affected by green compost and arbuscular mycorrhizal fungi. Plant Biosystems 145: 106–15.
Copetta A, Lingua G, Berta G. 2006. Effects of three AM fungi on growth, distribution of glandular hairs, and essential oil production in Ocimum basilicum L. var. Genovese. Mycorrhiza 16: 485–94.
Corbin A. 1986. The Foul and the Fragrant: Odor and the French Social Imagination. Leamington Spa, UK: Berg Publishers Ltd.
Cordero RJ. 2017. Melanin for space travel radioprotection. Environmental Microbiology 19: 2529–532.
Corrales A, Mangan SA, Turner BL, Dalling JW. 2016. An ectomycorrhizal nitrogen economy facilitates monodominance in a neotropical forest. Ecology Letters 19: 383–92.
Corrochano LM, Galland P. 2016. “Photomorphogenesis and Gravitropism in Fungi.” In Growth, Differentiation, and Sexuality. Wendland J, ed. Springer International Publishing, pp. 235–66.
Cosme M, Fernández I, van der Heijden MG, Pieterse C. 2018. Non-mycorrhizal Plants: The Exceptions that Prove the Rule. Trends in Plant Science 23: 577–87.
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. 2009. Bacterial community variation in human body habitats across space and time. Science 326: 1694–697.
Cottin H, Kotler J, Billi D, Cockell C, Demets R, Ehrenfreund P, Elsaesser A, d’Hendecourt L, van Loon JJ, Martins Z, et al. 2017. Space as a tool for astrobiology: review and recommendations for experimentations in earth orbit and beyond. Space Science Reviews 209: 83–181.
Coyle MC, Elya CN, Bronski MJ, Eisen MB. 2018. Entomophthovirus: An insect-derived iflavirus that infects a behavior manipulating fungal pathogen of dipterans. bioRxiv: 371526.
Craig ME, Turner BL, Liang C, Clay K, Johnson DJ, Phillips RP. 2018. Tree mycorrhizal type predicts within-site variability in the storage and distribution of soil organic matter. Global Change Biology 24: 3317–330.
Crowther T, Glick H, Covey K, Bettigole C, Maynard D, Thomas S, Smith J, Hintler G, Duguid M, Amatulli G, et al. 2015. Mapping tree density at a global scale. Nature 525: 201–68.
Currie CR, Poulsen M, Mendenhall J, Boomsma JJ, Billen J. 2006. Coevolved crypts and exocrine glands support mutualistic bacteria in fungus-growing ants. Science 311: 81–83.
Currie CR, Scott JA, Summerbell RC, Malloch D. 1999. Fungus-growing ants use antibiotic-producing bacteria to control garden parasites. Nature 398: 701–04.
Dadachova E, Casadevall A. 2008. Ionizing radiation: how fungi cope, adapt, and exploit with the help of melanin. Current Opinion in Microbiology 11: 525–31.
Dance A. 2018. Inner Workings: The mysterious parentage of the coveted black truffle. Proceedings of the National Academy of Sciences 115: 10188–190.
Darwin C, Darwin F. 1880. The Power of Movement in Plants. London, UK: John Murray.
Davis J, Aguirre L, Barber N, Stevenson P, Adler L. 2019. From plant fungi to bee parasites: mycorrhizae and soil nutrients shape floral chemistry and bee pathogens. Ecology 100: e02801.
Davis W. 1996. One River: Explorations and Discoveries in the Amazon Rain Forest. New York, NY: Simon and Schuster.
Dawkins R. 1982. The Extended Phenotype. Oxford, UK: Oxford University Press.
Dawkins R. 2004. Extended Phenotype – But Not Too Extended. A Reply to Laland, Turner and Jablonka. Biology and Philosophy 19: 377–96.
de Bekker C, Quevillon LE, Smith PB, Fleming KR, Ghosh D, Patterson AD, Hughes DP. 2014. Species-specific ant brain manipulation by a specialized fungal parasite. BMC Evolutionary Biology 14: 166.
de Gonzalo G, Colpa DI, Habib M, Fraaije MW. 2016. Bacterial enzymes involved in lignin degradation. Journal of Biotechnology 236: 110–19.
de Jong E, Field JA, Spinnler HE, Wijnberg JB, de Bont JA. 1994. Significant biogenesis of chlorinated aromatics by fungi in natural environments. Applied and Environmental Microbiology 60: 264–70.
de la Fuente-Nunez C, Meneguetti B, Franco O, Lu TK. 2017. Neuromicrobiology: how microbes influence the brain. ACS Chemical Neuroscience 9: 141–50.
de la Torre R, Miller AZ, Cubero B, Martín-Cerezo LM, Raguse M, Meeßen J. 2017. The effect of high-dose ionizing radiation on the astrobiological model lichen Circinaria gyrosa. Astrobiology 17: 145–53.
de la Torre Noetzel R, Miller AZ, de la Rosa JM, Pacelli C, Onofri S, Sancho L, Cubero B, Lorek A, Wolter D, de Vera JP. 2018. Cellular responses of the lichen Circinaria gyrosa in Mars-like conditions. Frontiers in Microbiology 9: 308.
Delaux PM, Radhakrishnan GV, Jayaraman D, Cheema J, Malbreil M, Volkening JD, Sekimoto H, Nishiyama T, Melkonian M, Pokorny L, et al. 2015. Algal ancestor of land plants was preadapted for symbiosis. Proceedings of the National Academy of Sciences 112: 13390–395.
Delavaux CS, Smith-Ramesh L, Kuebbing SE. 2017. Beyond nutrients: a meta-analysis of the diverse effects of arbuscular mycorrhizal fungi on plants and soils. Ecology 98: 2111–119.
Deleuze G, Guattari F. 2005. A Thousand Plateaus: Capitalism and Schizophrenia. Minneapolis, MN: University of Minnesota Press.
de los Ríos A, Sancho L, Grube M, Wierzchos J, Ascaso C. 2005. Endolithic growth of two Lecidea lichens in granite from continental Antarctica detected by molecular and microscopy techniques. New Phytologist 165: 181–90.
Delwiche C, Cooper E. 2015. The evolutionary origin of a terrestrial flora. Current Biology 25: R899–R910.
Deng Y, Qu Z, Naqvi NI. 2015. Twilight, a novel circadian-regulated gene, integrates phototropism with nutrient and redox homeostasis during fungal development. PLOS Pathogens 11: e1004972.
Deveau A, Bonito G, Uehling J, Paoletti M, Becker M, Bindschedler S, Hacquard S, Hervé V, Labbé J, Lastovetsky O, et al. 2018. Bacterial-fungal interactions: ecology, mechanisms and challenges. FEMS Microbiology Reviews 42: 335–52.
de Vera JP, Alawi M, Backhaus T, Baqué M, Billi D, Böttger U, Berger T, Bohmeier M, Cockell C, Demets R, et al. 2019. Limits of life and the habitability of Mars: The ESA Space Experiment BIOMEX on the ISS. Astrobiology 19: 145–57.
de Vries FT, Thébault E, Liiri M, Birkhofer K, Tsiafouli MA, Bjørnlund L, Jørgensen H, Brady M, Christensen S, de Ruiter PC, et al. 2013. Soil food web properties explain ecosystem services across European land use systems. Proceedings of the National Academy of Sciences 110: 14296–301.
de Waal FBM. 1999. Anthropomorphism and Anthropodenial: Consistency in Our Thinking about Humans and Other Animals. Philosophical Topics 27: 255–80.
Diamant L. 2004. Chaining the Hudson: The Fight for the River in the American Revolution. New York, NY: Fordham University Press.
di Fossalunga A, Lipuma J, Venice F, Dupont L, Bonfante P. 2017. The endobacterium of an arbuscular mycorrhizal fungus modulates the expression of its toxin – antitoxin systems during the life cycle of its host. The ISME Journal 11: 2394–398.
Ditengou FA, Müller A, Rosenkranz M, Felten J, Lasok H, van Doorn M, Legué V, Palme K, Schnitzler J-P, Polle A. 2015. Volatile signalling by sesquiterpenes from ectomycorrhizal fungi reprogrammes root architecture. Nature Communications 6: 6279.
Dixon LS. 1984. Bosch’s “St. Anthony Triptych”—An Apothecary’s Apotheosis. Art Journal 44: 119–31.
Donoghue PC, Antcliffe JB. 2010. Early life: origins of multicellularity. Nature 466: 41.
Doolittle FW, Booth A. 2017. It’s the song, not the singer: an exploration of holobiosis and evolutionary theory. Biology & Philosophy 32: 5–24.
Dressaire E, Yamada L, Song B, Roper M. 2016. Mushrooms use convectively created airflows to disperse their spores. Proceedings of the National Academy of Sciences 113: 2833–838.
Dudley R. 2014. The Drunken Monkey: Why We Drink and Abuse Alcohol. Berkeley, CA: University of California Press.
Dugan FM. 2011. Conspectus of World Ethnomycology. St. Paul, MN: American Phytopathological Society.
Dugan FM. 2008. Fungi in the Ancient World. St. Paul, MN: American Phytopathological Society.
Dunn R. 2012. A Sip for the Ancestors. Scientific American: blogs.scientificamerican.com/guest-blog/a-sip-for-the-ancestors-the-true-story-of-civilizations-stumbling-debt-to-beer-and-fungus/ [accessed October 29, 2019].
Dupré J, Nicholson DJ. 2018. “A manifesto for a processual biology.” In Dupré J, Nicholson DJ, eds. Everything Flows: Towards a Processual Philosophy of Biology. Oxford, UK: Oxford University Press, pp. 3–48.
Dyke E. 2008. Psychedelic Psychiatry: LSD from Clinic to Campus. Baltimore, MD: The Johns Hopkins University Press.
Eason W, Newman E, Chuba P. 1991. Specificity of interplant cycling of phosphorus: The role of mycorrhizas. Plant and Soil 137: 267–74.
Elser J, Bennett E. 2011. A broken biogeochemical cycle. Nature: www.nature.com/articles/478029a [accessed October 29, 2019].
Eltz T, Zimmermann Y, Haftmann J, Twele R, Francke W, Quezada-Euan JJG, Lunau K. 2007. Enfleurage, lipid recycling and the origin of perfume collection in orchid bees. Proceedings of the Royal Society B 274: 2843–848.
Eme L, Spang A, Lombard J, Stairs CW, Ettema TJG. 2017. Archaea and the origin of eukaryotes. Nature Reviews Microbiology 15: 711–23.
Engelthaler DM, Casadevall A. 2019. On the Emergence of Cryptococcus gattii in the Pacific Northwest: ballast tanks, tsunamis, and black swans. mBio 10: e02193–19.
Ensminger PA. 2001. Life Under the Sun. New Haven, CT: Yale Scholarship Online.
Epstein S. 1995. The construction of lay expertise: AIDS activism and the forging of credibility in the reform of clinical trials. Science, Technology, Human Values 20: 408–37.
Erens H, Boudin M, Mees F, Mujinya B, Baert G, Strydonck M, Boeckx P, Ranst E. 2015. The age of large termite mounds – radiocarbon dating of Macrotermes falciger mounds of the Miombo woodland of Katanga, DR Congo. Palaeogeography, Palaeoclimatology, Palaeoecology 435: 265–71.
Espinosa-Valdemar R, Turpin-Marion S, Delfín-Alcalá I, Vázquez-Morillas A. 2011. Disposable diapers biodegradation by the fungus Pleurotus ostreatus. Waste Management 31: 1683–688.
Fairhead J, Leach M. 2003. “Termites, Society and Ecology: Perspectives from West Africa.” In Insects in Oral Literature and Traditions. Motte-Florac E, Thomas J, eds. Leuven, Belgium: Peeters.
Fairhead J, Scoones I. 2005. Local knowledge and the social shaping of soil investments: critical perspectives on the assessment of soil degradation in Africa. Land Use Policy 22: 33–41.
Fairhead JR. 2016. Termites, mud daubers and their earths: a multispecies approach to fertility and power in West Africa. Conservation and Society 14: 359–67.
Farahany NA, Greely HT, Hyman S, Koch C, Grady C, Pașca SP, Sestan N, Arlotta P, Bernat JL, Ting J, et al. 2018. The ethics of experimenting with human brain tissue. Nature 556: 429–32.
Fellbaum CR, Mensah JA, Cloos AJ, Strahan GE, Pfeffer PE, Kiers TE, Bücking H. 2014. Fungal nutrient allocation in common mycorrhizal networks is regulated by the carbon source strength of individual host plants. New Phytologist 203: 646–56.
Ferguson BA, Dreisbach T, Parks C, Filip G, Schmitt C. 2003. Coarse-scale population structure of pathogenic Armillaria species in a mixed-conifer forest in the Blue Mountains of northeast Oregon. Canadian Journal of Forest Research 33: 612–23.
Fernandez CW, Nguyen NH, Stefanski A, Han Y, Hobbie SE, Montgomery RA, Reich PB, Kennedy PG. 2017. Ectomycorrhizal fungal response to warming is linked to poor host performance at the boreal-temperate ecotone. Global Change Biology 23: 1598–609.
Ferreira, B., There’s growing evidence that the universe is connected by giant structures, Vice (2019), www.vice.com/en_us/article/zmj7pw/theres-growing-evidence-that-the-universe-is-connected-by-giant-structures [accessed 16 November 2019].
Field KJ, Cameron DD, Leake JR, Tille S, Bidartondo MI, Beerling DJ. 2012. Contrasting arbuscular mycorrhizal responses of vascular and non-vascular plants to a simulated Palaeozoic CO2 decline. Nature Communications 3: 835.
Field KJ, Leake JR, Tille S, Allinson KE, Rimington WR, Bidartondo MI, Beerling DJ, Cameron DD. 2015. From mycoheterotrophy to mutualism: mycorrhizal specificity and functioning in Ophioglossum vulgatum sporophytes. New Phytologist 205: 1492–502.
Fisher MC, Hawkins NJ, Sanglard D, Gurr SJ. 2018. Worldwide emergence of resistance to antifungal drugs challenges human health and food security. Science 360: 739–42.
Fisher MC, Henk DA, Briggs CJ, Brownstein JS, Madoff LC, McCraw SL, Gurr SJ. 2012. Emerging fungal threats to animal, plant and ecosystem health. Nature 484: 186–94.
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, et al. 2012. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336: 1715–719.
Foley JA, DeFries R, Asner GP, Barford C, Bonan G, Carpenter SR, Chapin SF, Coe MT, Daily GC, Gibbs HK, et al. 2005. Global consequences of land use. Science 309: 570–74.
Francis R, Read DJ. 1984. Direct transfer of carbon between plants connected by vesicular – arbuscular mycorrhizal mycelium. Nature 307: 53–56.
Frank AB. 2005. On the nutritional dependence of certain trees on root symbiosis with belowground fungi (an English translation of A. B. Frank’s classic paper of 1885). Mycorrhiza 15: 267–75.
Fredericksen MA, Zhang Y, Hazen ML, Loreto RG, Mangold CA, Chen DZ, Hughes DP. 2017. Three-dimensional visualization and a deep-learning model reveal complex fungal parasite networks in behaviorally manipulated ants. Proceedings of the National Academy of Sciences 114: 12590–595.
Fricker MD, Boddy L, Bebber DP. 2007a. “Network Organisation of Mycelial Fungi.” In Biology of the Fungal Cell. Howard RJ, Gow NAR, eds. Springer International Publishing, pp. 309–30.
Fricker MD, Heaton LL, Jones NS, Boddy L. 2017. The Mycelium as a Network. Microbiology Spectrum 5: FUNK-0033-2017.
Fricker MD, Lee J, Bebber D, Tlalka M, Hynes J, Darrah P, Watkinson S, Boddy L. 2008. Imaging complex nutrient dynamics in mycelial networks. Journal of Microscopy 231: 317–31.
Fricker MD, Tlalka M, Bebber D, Tagaki S, Watkinson SC, Darrah PR. 2007b. Fourier-based spatial mapping of oscillatory phenomena in fungi. Fungal Genetics and Biology 44: 1077–84.
Fries N. 1943. Untersuchungen über Sporenkeimung und Mycelentwicklung bodenbewohneneder Hymenomyceten. Symbolae Botanicae Upsaliensis 6: 633–664.
Fritts R. 2019. A new pesticide is all the buzz. Ars Technica: arstechnica.com/science/2019/10/now-available-in-the-us-a-pesticide-delivered-by-bees/ [accessed October 29, 2019].
Fröhlich-Nowoisky J, Pickersgill DA, Després VR, Pöschl U. 2009. High diversity of fungi in air particulate matter. Proceedings of the National Academy of Sciences 106: 12814–819.
Fukusawa Y, Savoury M, Boddy L. 2019. Ecological memory and relocation decisions in fungal mycelial networks: responses to quantity and location of new resources. The ISME Journal 10.1038/s41396-018-0189-7.
Galland P. 2014. The sporangiophore of Phycomyces blakesleeanus: a tool to investigate fungal gravireception and graviresponses. Plant Biology 16: 58–68.
Gavito ME, Jakobsen I, Mikkelsen TN, Mora F. 2019. Direct evidence for modulation of photosynthesis by an arbuscular mycorrhiza-induced carbon sink strength. New Phytologist 223: 896–907.
Geml J, Wagner MR. 2018. Out of sight, but no longer out of mind – towards an increased recognition of the role of soil microbes in plant speciation. New Phytologist 217: 965–67.
Giauque H, Hawkes CV. 2013. Climate affects symbiotic fungal endophyte diversity and performance. American Journal of Botany 100: 1435–444.
Gilbert CD, Sigman M. 2007. Brain states: top-down influences in sensory processing. Neuron 54: 677–96.
Gilbert JA, Lynch SV. 2019. Community ecology as a framework for human microbiome research. Nature Medicine 25: 884–89.
Gilbert SF, Sapp J, Tauber AI. 2012. A symbiotic view of life: we have never been individuals. The Quarterly Review of Biology 87: 325–41.
Giovannetti M, Avio L, Fortuna P, Pellegrino E, Sbrana C, Strani P. 2006. At the Root of the Wood Wide Web. Plant Signaling & Behavior 1: 1–5.
Giovannetti M, Avio L, Sbrana C. 2015. “Functional Significance of Anastomosis in Arbuscular Mycorrhizal Networks.” In Mycorrhizal Networks. Horton T, ed. Springer International Publishing, pp. 41–67.
Giovannetti M, Sbrana C, Avio L, Strani P. 2004. Patterns of below-ground plant interconnections established by means of arbuscular mycorrhizal networks. New Phytologist 164: 175–81.
Gluck-Thaler E, Slot JC. 2015. Dimensions of horizontal gene transfer in eukaryotic microbial pathogens. PLOS Pathogens 11: e1005156.
Godfray CH, Beddington JR, Crute IR, Haddad L, Lawrence D, Muir JF, Pretty J, Robinson S, Thomas SM, Toulmin C. 2010. Food security: the challenge of feeding 9 billion people. Science 327: 812–18.
Godfrey-Smith P. 2017. Other Minds: The Octopus and the Evolution of Intelligent Life. London, UK: William Collins.
Goffeau A, Barrell B, Bussey H, Davis R, Dujon B, Feldmann H, Galibert F, Hoheisel J, Jacq C, Johnston M, et al. 1996. Life with 6000 Genes. Science 274: 546–67.
Gogarten PJ, Townsend JP. 2005. Horizontal gene transfer, genome innovation and evolution. Nature Reviews Microbiology 3: 679–87.
Gond SK, Kharwar RN, White JF. 2014. Will fungi be the new source of the blockbuster drug taxol? Fungal Biology Reviews 28: 77–84.
Gontier N. 2015a. “Historical and Epistemological Perspectives on What Horizontal Gene Transfer Mechanisms Contribute to Our Understanding of Evolution.” In Reticulate Evolution. Gontier N, ed. Springer International Publishing.
Gontier N. 2015b. “Reticulate Evolution Everywhere.” In Reticulate Evolution. Gontier N, ed. Springer International Publishing.
Gordon J, Knowlton N, Relman DA, Rohwer F, Youle M. 2013. Superorganisms and holobionts. Microbe 8: 152–53.
Goryachev AB, Lichius A, Wright GD, Read ND. 2012. Excitable behavior can explain the “ping-pong” mode of communication between cells using the same chemoattractant. BioEssays 34: 259–66.
Gorzelak MA, Asay AK, Pickles BJ, Simard SW. 2015. Inter-plant communication through mycorrhizal networks mediates complex adaptive behaviour in plant communities. AoB PLANTS 7: plv050.
Gott JR. 2016. The Cosmic Web: Mysterious Architecture of the Universe. Princeton, NJ: Princeton University Press.
Govoni F, Orrù E, Bonafede A, Iacobelli M, Paladino R, Vazza F, Murgia M, Vacca V, Giovannini G, Feretti L, et al. 2019. A radio ridge connecting two galaxy clusters in a filament of the cosmic web. Science 364: 981–84.
Gow NAR, Morris BM. 2009. The electric fungus. Botanical Journal of Scotland 47: 263–77.
Goward T. 1995. Here for a Long Time, Not a Good Time. Nature Canada 24: 9. www.waysofenlichenment.net/public/pdfs/Goward_1995_Here_for_a_good_time_not_a_long_time.pdf [accessed October 29, 2019].
Goward T. 2009a. Twelve Readings on the Lichen Thallus IV – Re-emergence. Evansia 26: 1–6. www.waysofenlichenment.net/ways/readings/essay4 [accessed October 29, 2019].
Goward T. 2009b. Twelve Readings on the Lichen Thallus V–Conversational. Evansia 26: 31–37. www.waysofenlichenment.net/ways/readings/essay5 [accessed October 29, 2019].
Goward T. 2009c. Twelve Readings on the Lichen Thallus VII – Species. Evansia 26: 153–62. www.waysofenlichenment.net/ways/readings/essay7 [accessed October 29, 2019].
Goward T. 2010. Twelve Readings on the Lichen Thallus VIII – Theoretical. Evansia 27: 2–10. www.waysofenlichenment.net/ways/readings/essay8 [accessed October 29, 2019].
Gregory PH. 1982. Fairy rings; free and tethered. Bulletin of the British Mycological Society 16: 161–63.
Griffiths D. 2015. Queer Theory for Lichens. UnderCurrents 19: 36–45.
Griffiths R, Johnson M, Carducci M, Umbricht A, Richards W, Richards B, Cosimano M, Klinedinst M. 2016. Psilocybin produces substantial and sustained decreases in depression and anxiety in patients with life-threatening cancer: A randomized double-blind trial. Journal of Psychopharmacology 30: 1181–197.
Griffiths R, Richards W, Johnson M, McCann U, Jesse R. 2008. Mystical-type experiences occasioned by psilocybin mediate the attribution of personal meaning and spiritual significance 14 months later. Journal of Psychopharmacology 22: 621–32.
Grman E. 2012. Plant species differ in their ability to reduce allocation to non-beneficial arbuscular mycorrhizal fungi. Ecology 93: 711–18.
Grube M, Cernava T, Soh J, Fuchs S, Aschenbrenner I, Lassek C, Wegner U, Becher D, Riedel K, Sensen CW, et al. 2015. Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics. The ISME Journal 9: 412–24.
Gupta M., Prasad A, Ram M, Kumar S. 2002. Effect of the vesicular – arbuscular mycorrhizal (VAM) fungus Glomus fasciculatum on the essential oil yield related characters and nutrient acquisition in the crops of different cultivars of menthol mint (Mentha arvensis) under field conditions. Bioresource Technology 81: 77–79.
Guzmán G, Allen JW, Gartz J. 1998. A worldwide geographical distribution of the neurotropic fungi, an analysis and discussion. Annali del Museo Civico di Rovereto: Sezione Archeologia, Storia, Scienze Naturali. 14: 189–280. www.museocivico.rovereto.tn.it/UploadDocs/104_art09-Guzman%20&%2 °C.pdf [accessed October 29, 2019].
Hague T, Florini M, Andrews P. 2013. Preliminary in vitro functional evidence for reflex responses to noxious stimuli in the arms of Octopus vulgaris. Journal of Experimental Marine Biology and Ecology 447: 100–5.
Hall IR, Brown GT, Zambonelli A. 2007. Taming the Truffle. Portland, OR: Timber Press.
Hamden E. 2019. Observing the cosmic web. Science 366: 31–32.
Haneef M, Ceseracciu L, Canale C, Bayer IS, Heredia-Guerrero JA, Athanassiou A. 2017. Advanced materials from fungal mycelium: fabrication and tuning of physical properties. Scientific Reports 7: 41292.
Hanson KL, Nicolau DV, Filipponi L, Wang L, Lee AP, Nicolau DV. 2006. Fungi use efficient algorithms for the exploration of microfluidic networks. Small 2: 1212–220.
Haraway DJ. 2004. Crystals, Fabrics, and Fields. Berkeley, CA: North Atlantic Books.
Haraway DJ. 2016. Staying with the Trouble: Making Kin in the Chthulucene. Durham, NC: Duke University Press.
Harms H, Schlosser D, Wick LY. 2011. Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nature Reviews Microbiology 9: 177–92.
Harold FM, Kropf DL, Caldwell JH. 1985. Why do fungi drive electric currents through themselves? Experimental Mycology 9: 183–86.
Hart MM, Antunes PM, Chaudhary V, Abbott LK. 2018. Fungal inoculants in the field: Is the reward greater than the risk? Functional Ecology 32: 126–35.
Hastings A, Abbott KC, Cuddington K, Francis T, Gellner G, Lai Y-C, Morozov A, Petrovskii S, Scranton K, Zeeman M. 2018. Transient phenomena in ecology. Science 361: eaat6412.
Hawksworth D. 2001. The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycological Research 12: 1422–432.
Hawksworth D. 2009. “Mycology: A Neglected Megascience.” In Applied Mycology. Rai M, Bridge PD, eds. Oxford, UK: CABI, pp. 1–16.
Hawksworth DL, Lücking R. 2017. Fungal Diversity Revisited: 2.2 to 3.8 Million Species. Microbiology Spectrum 5: FUNK-00522016.
Heads SW, Miller AN, Crane LJ, Thomas JM, Ruffatto DM, Methven AS, Raudabaugh DB, Wang Y. 2017. The oldest fossil mushroom. PLOS ONE 12: e0178327.
Hedger J. 1990. Fungi in the tropical forest canopy. Mycologist 4: 200–2.
Held M, Edwards C, Nicolau D. 2009. Fungal intelligence; Or on the behaviour of microorganisms in confined micro-environments. Journal of Physics: Conference Series 178: 012005.
Held M, Edwards C, Nicolau DV. 2011. Probing the growth dynamics of Neurospora crassa with microfluidic structures. Fungal Biology 115: 493–505.
Held M, Kašpar O, Edwards C, Nicolau DV. 2019. Intracellular mechanisms of fungal space searching in microenvironments. Proceedings of the National Academy of Sciences 116: 13543–552.
Held M, Lee AP, Edwards C, Nicolau DV. 2010. Microfluidics structures for probing the dynamic behaviour of filamentous fungi. Microelectronic Engineering 87: 786–89.
Helgason T, Daniell T, Husband R, Fitter A, Young J. 1998. Ploughing up the wood-wide web? Nature 394: 431–31.
Hendricks PS. 2018. Awe: a putative mechanism underlying the effects of classic psychedelic-assisted psychotherapy. International Review of Psychiatry 30: 1–12.
Hibbett D, Blanchette R, Kenrick P, Mills B. 2016. Climate, decay, and the death of the coal forests. Current Biology 26: R563–R567.
Hibbett D, Gilbert L, Donoghue M. 2000. Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes. Nature 407: 506–08.
Hickey PC, Dou H, Foshe S, Roper M. 2016. Anti-jamming in a fungal transport network. arXiv:1601:06097v1 (physics.bio-ph).
Hickey PC, Jacobson D, Read ND, Glass LN. 2002. Live-cell imaging of vegetative hyphal fusion in Neurospora crassa. Fungal Genetics and Biology 37: 109–19.
Hillman B. 2018. Extra Hidden Life, Among the Days. Middletown, CT: Wesleyan University Press.
Hiruma K, Kobae Y, Toju H. 2018. Beneficial associations between Brassicaceae plants and fungal endophytes under nutrient-limiting conditions: evolutionary origins and host-symbiont molecular mechanisms. Current Opinion in Plant Biology 44: 145–54.
Hittinger C. 2012. Endless rots most beautiful. Science 336: 1649–650.
Hoch HC, Staples RC, Whitehead B, Comeau J, Wolf ED. 1987. Signaling for growth orientation and cell differentiation by surface topography in Uromyces. Science 235: 1659–662.
Hoeksema J. 2015. “Experimentally Testing Effects of Mycorrhizal Networks on Plant-Plant Interactions and Distinguishing Among Mechanisms.” In Mycorrhizal Networks. Horton T, ed. Springer International Publishing, pp. 255–77.
Hoeksema JD, Chaudhary VB, Gehring CA, Johnson NC, Karst J, Koide RT, Pringle A, Zabinski C, Bever JD, Moore JC, et al. 2010. A meta-analysis of context-dependency in plant response to inoculation with mycorrhizal fungi. Ecology Letters 13: 394–407.
Hom EF, Murray AW. 2014. Niche engineering demonstrates a latent capacity for fungal-algal mutualism. Science 345: 94–98.
Honegger R. 2000. Simon Schwendener (1829–1919) and the dual hypothesis of lichens. The Bryologist 103: 307–13.
Honegger R, Edwards D, Axe L. 2012. The earliest records of internally stratified cyanobacterial and algal lichens from the Lower Devonian of the Welsh Borderland. New Phytologist 197: 264–75.
Honegger R, Edwards D, Axe L, Strullu-Derrien C. 2018. Fertile Prototaxites taiti: a basal ascomycete with inoperculate, polysporous asci lacking croziers. Philosophical Transactions of the Royal Society B 373: 20170146.
Hooks KB, Konsman J, O’Malley MA. 2018. Microbiota-gut-brain research: a critical analysis. Behavioral and Brain Sciences 42: e60.
Horie M, Honda T, Suzuki Y, Kobayashi Y, Daito T, Oshida T, Ikuta K, Jern P, Gojobori T, Coffin JM, et al. 2010. Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature 463: 84–87.
Hortal S, Plett K, Plett J, Cresswell T, Johansen M, Pendall E, Anderson I. 2017. Role of plant – fungal nutrient trading and host control in determining the competitive success of ectomycorrhizal fungi. The ISME Journal 11: 2666–676.
Howard A. 1940. An Agricultural Testament. Oxford, UK: Oxford University Press. www.journeytoforever.org/farm_library/howardAT/ATtoc.html#contents [accessed October 29, 2019].
Howard A. 1945. Farming and Gardening for Health and Disease. London, UK: Faber and Faber. journeytoforever.org/farm_library/howardSH/SHtoc.html [accessed October 29, 2019].
Howard R, Ferrari M, Roach D, Money N. 1991. Penetration of hard substrates by a fungus employing enormous turgor pressures. Proceedings of the National Academy of Sciences 88: 11281–284.
Hoysted GA, Kowal J, Jacob A, Rimington WR, Duckett JG, Pressel S, Orchard S, Ryan MH, Field KJ, Bidartondo MI. 2018. A mycorrhizal revolution. Current Opinion in Plant Biology 44: 1–6.
Hsueh Y-P, Mahanti P, Schroeder FC, Sternberg PW. 2013. Nematode-Trapping Fungi Eavesdrop on Nematode Pheromones. Current Biology 23: 83–86.
Huffnagle GB, Noverr MC. 2013. The emerging world of the fungal microbiome. Trends in Microbiology 21: 334–41.
Hughes DP. 2013. Pathways to understanding the extended phenotype of parasites in their hosts. Journal of Experimental Biology 216: 142–47.
Hughes DP, Araújo J, Loreto R, Quevillon L, de Bekker C, Evans H. 2016. From so simple a beginning: the evolution of behavioural manipulation by fungi. Advances in Genetics 94: 437–69.
Hughes DP. 2014. On the Origins of Parasite-Extended Phenotypes. Integrative and Comparative Biology 54: 210–17.
Hughes DP, Wappler T, Labandeira CC. 2011. Ancient death-grip leaf scars reveal ant – fungal parasitism. Biology Letters 7: 67–70.
Humboldt A von. 1849. Cosmos: A Sketch of Physical Description of the Universe. London, UK: Henry G. Bohn.
Humboldt A von. 1845. Kosmos: Entwurf einer physischen Weltbeschreibung. Stuttgart and Tübingen, GER: J.G. Cotta’schen Buchhandlungen. archive.org/details/b29329693_0001 [accessed October 29, 2019].
Humphrey N. 1976. “The Social Function of Intellect.” In Growing Points in Ethology. Bateson P, Hindle RA, eds. Cambridge, UK: Cambridge University Press, pp. 303–17.
Hustak C, Myers N. 2012. Involutionary momentum: affective ecologies and the sciences of plant/insect encounters. Differences 23: 74–118.
Hyde K, Jones E, Leano E, Pointing S, Poonyth A, Vrijmoed L. 1998. Role of fungi in marine ecosystems. Biodiversity and Conservation 7: 1147–161.
Ingold T. 2003. “Two Reflections on Ecological Knowledge.” In Nature Knowledge: Ethnoscience, Cognition, and Utility. Sanga G, Ortalli G, eds. Oxford, UK: Berghahn Books, pp. 301–11.
Islam F, Ohga S. 2012. The response of fruit body formation on Tricholoma matsutake in situ condition by applying electric pulse stimulator. ISRN Agronomy 2012: 1–6.
Jackson S, Heath I. 1992. UV microirradiations elicit Ca2+-dependent apex-directed cytoplasmic contractions in hyphae. Protoplasma 170: 46–52.
Jacobs LF, Arter J, Cook A, Sulloway FJ. 2015. Olfactory orientation and navigation in humans. PLOS ONE 10: e0129387.
Jacobs R. 2019. The Truffle Underground. New York, NY: Clarkson Potter.
Jakobsen I, Hammer E. 2015. “Nutrient Dynamics in Arbuscular Mycorrhizal Networks.” In Mycorrhizal Networks. Horton T, ed. Springer International Publishing, pp. 91–131.
James W. 2002. The Varieties of Religious Experience: A Study in Human Nature (Centenary Edition). London, UK: Routledge.
Jedd G, Pieuchot L. 2012. Multiple modes for gatekeeping at fungal cell-to-cell channels. Molecular Microbiology 86: 1291–294.
Jenkins B, Richards TA. 2019. Symbiosis: wolf lichens harbour a choir of fungi. Current Biology 29: R88–R90.
Ji B, Bever JD. 2016. Plant preferential allocation and fungal reward decline with soil phosphorus: implications for mycorrhizal mutualism. Ecosphere 7: e01256.
Johnson D, Gamow R. 1971. The avoidance response in Phycomyces. The Journal of General Physiology 57: 41–49.
Johnson MW, Garcia-Romeu A, Cosimano MP, Griffiths RR. 2014. Pilot study of the 5-HT 2AR agonist psilocybin in the treatment of tobacco addiction. Journal of Psychopharmacology 28: 983–92.
Johnson MW, Garcia-Romeu A, Griffiths RR. 2015. Long-term follow-up of psilocybin-facilitated smoking cessation. The American Journal of Drug and Alcohol Abuse 43: 55–60.
Johnson MW, Garcia-Romeu A, Johnson PS, Griffiths RR. 2017. An online survey of tobacco smoking cessation associated with naturalistic psychedelic use. Journal of Psychopharmacology 31: 841–50.
Johnson NC, Angelard C, Sanders IR, Kiers TE. 2013. Predicting community and ecosystem outcomes of mycorrhizal responses to global change. Ecology Letters 16: 140–53.
Jolivet E, L’Haridon S, Corre E, Forterre P, Prieur D. 2003. Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation. International Journal of Systematic and Evolutionary Microbiology 53: 847–51.
Jones MP, Lawrie AC, Huynh TT, Morrison PD, Mautner A, Bismarck A, John S. 2019. Agricultural by-product suitability for the production of chitinous composites and nanofibers. Process Biochemistry 80: 95–102.
Jönsson KI, Rabbow E, Schill RO, Harms-Ringdahl M, Rettberg P. 2008. Tardigrades survive exposure to space in low Earth orbit. Current Biology 18: R729–R731.
Jönsson KI, Wojcik A. 2017. Tolerance to X-rays and heavy ions (Fe, He) in the tardigrade Richtersius coronifer and the bdelloid rotifer Mniobia russeola. Astrobiology 17: 163–67.
Kaminsky LM, Trexler RV, Malik RJ, Hockett KL, Bell TH. 2018. The inherent conflicts in developing soil microbial inoculants. Trends in Biotechnology 37: 140–51.
Kammerer L, Hiersche L, Wirth E. 1994. Uptake of radiocaesium by different species of mushrooms. Journal of Environmental Radioactivity 23: 135–50.
Karst J, Erbilgin N, Pec GJ, Cigan PW, Najar A, Simard SW, Cahill JF. 2015. Ectomycorrhizal fungi mediate indirect effects of a bark beetle outbreak on secondary chemistry and establishment of pine seedlings. New Phytologist 208: 904–14.
Katz SE. 2003. Wild Fermentation. White River Junction, VT: Chelsea Green Publishing Company.
Kavaler L. 1967. Mushrooms, Moulds and Miracles: The Strange Realm of Fungi. London, UK: George G. Harrap & Co.
Keijzer FA. 2017. Evolutionary convergence and biologically embodied cognition. Journal of the Royal Society Interface Focus 7: 20160123.
Keller EF. 1984. A Feeling for the Organism. New York, NY: Times Books.
Kelly JR, Borre Y, O’Brien C, Patterson E, Aidy El S, Deane J, Kennedy PJ, Beers S, Scott K, Moloney G, et al. 2016. Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat. Journal of Psychiatric Research 82: 109–18.
Kelty C. 2010. Outlaw, hackers, victorian amateurs: diagnosing public participation in the life sciences today. Journal of Science Communication 9.
Kendi IX. 2017. Stamped from the Beginning. New York, NY: Nation Books.
Kennedy PG, Walker JKM, Bogar LM. 2015. “Interspecific Mycorrhizal Networks and Non-networking Hosts: Exploring the Ecology of the Host Genus Alnus.” In Mycorrhizal Networks. Horton T, ed. Springer International Publishing, pp. 227–54.
Kerényi C. 1976. Dionysus: Archetypal Image of Indestructible Life. Princeton, NJ: Princeton University Press.
Kern VD. 1999. Gravitropism of basidiomycetous fungi – On Earth and in microgravity. Advances in Space Research 24: 697–706.
Khan S, Nadir S, Shah Z, Shah A, Karunarathna SC, Xu J, Khan A, Munir S, Hasan F. 2017. Biodegradation of polyester polyurethane by Aspergillus tubingensis. Environmental Pollution 225: 469–80.
Kiers ET, Denison RF. 2014. Inclusive fitness in agriculture. Philosophical Transactions of the Royal Society B 369: 20130367.
Kiers TE, Duhamel M, Beesetty Y, Mensah JA, Franken O, Verbruggen E, Fellbaum C, Fellbaum CR, Kowalchuk GA, et al. 2011. Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis. Science 333: 880–82.
Kiers TE, West SA, Wyatt GA, Gardner A, Bücking H, Werner GD. 2016. Misconceptions on the application of biological market theory to the mycorrhizal symbiosis. Nature Plants 2: 16063.
Kim G, LeBlanc ML, Wafula EK, dePamphilis CW, Westwood JH. 2014. Genomic-scale exchange of mRNA between a parasitic plant and its hosts. Science 345: 808–11.
Kimmerer RW. 2013. Braiding Sweetgrass. Minneapolis, MN: Milkweed Editions.
King A. 2017. Technology: The Future of Agriculture. Nature 544: S21–S23.
King FH. 1911. Farmers of Forty Centuries. Emmaus, PA: Organic Gardening Press. soilandhealth.org/wp-content/uploads/01aglibrary/010122king/ffc.html [accessed October 29, 2019].
Kivlin SN, Emery SM, Rudgers JA. 2013. Fungal symbionts alter plant responses to global change. American Journal of Botany 100: 1445–457.
Klein A-M, Vaissière BE, Cane JH, Steffan-Dewenter I, Cunningham SA, Kremen C, Tscharntke T. 2007. Importance of pollinators in changing landscapes for world crops. Proceedings of the Royal Society B 274: 303–13.
Klein T, Siegwolf RT, Körner C. 2016. Belowground carbon trade among tall trees in a temperate forest. Science 352: 342–44.
Kozo-Polyanksy BM. 2010. Symbiogenesis: A New Principle of Evolution. Cambridge, MA: Harvard University Press.
Krebs TS, Johansen P-Ø. 2012. Lysergic acid diethylamide (LSD) for alcoholism: meta-analysis of randomized controlled trials. Journal of Psychopharmacology 26: 994–1002.
Kroken S. 2007. “Miss Potter’s First Love”—A Rejoinder. Inoculum 58: 14.
Kusari S, Singh S, Jayabaskaran C. 2014. Biotechnological potential of plant-associated endophytic fungi: hope versus hype. Trends in Biotechnology 32: 297–303.
Ladinsky D. 2002. Love Poems from God. New York, NY: Penguin.
Ladinsky D. 2010. A Year with Hafiz: Daily Contemplations. New York, NY: Penguin.
Lai J, Koh C, Tjota M, Pieuchot L, Raman V, Chandrababu K, Yang D, Wong L, Jedd G. 2012. Intrinsically disordered proteins aggregate at fungal cell-to-cell channels and regulate intercellular connectivity. Proceedings of the National Academy of Sciences 109: 15781–786.
Lalley J, Viles H. 2005. Terricolous lichens in the northern Namib Desert of Namibia: distribution and community composition. The Lichenologist 37: 77–91.
Lanfranco L, Fiorilli V, Gutjahr C. 2018. Partner communication and role of nutrients in the arbuscular mycorrhizal symbiosis. New Phytologist 220: 1031–46.
Latty T, Beekman M. 2011. Irrational decision-making in an amoeboid organism: transitivity and context-dependent preferences. Proceedings of the Royal Society B 278: 307–12.
Leake J, Johnson D, Donnelly D, Muckle G, Boddy L, Read D. 2004. Networks of power and influence: the role of mycorrhizal mycelium in controlling plant communities and agroecosystem functioning. Canadian Journal of Botany 82: 1016–45.
Leake J, Read D. 2017. “Mycorrhizal Symbioses and Pedogenesis Throughout Earth’s History.” In Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage. Johnson N, Gehring C, Jansa J, eds. Oxford, UK: Elsevier, pp. 9–33.
Leary T. 2005. “The Initiation of the ‘High Priest’.” In Sacred Mushroom of Visions: Teonanacatl. Metzner R, ed. Rochester, VT: Park Street Press, 160–78.
Lederberg J. 1952. Cell genetics and hereditary symbiosis. Physiological Reviews 32: 403–30.
Lederberg J, Cowie D. 1958. Moondust; the study of this covering layer by space vehicles may offer clues to the biochemical origin of life. Science 127: 1473–475.
Ledford H. 2019. Billion-year-old fossils set back evolution of earliest fungi. Nature: www.nature.com/articles/d41586-019-01629-1 [accessed October 29, 2019].
Lee NN, Friz J, Fries MD, Gil JF, Beck A, Pellinen-Wannberg A, Schmitz B, Steele A, Hofmann BA. 2017. “The Extreme Biology of Meteorites: Their Role in Understanding the Origin and Distribution of Life on Earth and in the Universe.” In Adaptation of Microbial Life to Environmental Extremes. Stan-Lotter H, Fendrihan S, eds. Springer International Publishing, pp. 283–325.
Lee Y, Mazmanian SK. 2010. Has the microbiota played a critical role in the evolution of the adaptive immune system? Science 330: 1768–773.
Legras J, Merdinoglu D, Couet J, Karst F. 2007. Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Molecular Ecology 16: 2091–102.
Le Guin U. 2017. “Deep in Admiration.” In Arts of Living on a Damaged Planet: Ghosts of the Anthropocene. Tsing A, Swanson H, Gan E, Bubandt N, eds. Minneapolis, MN: University of Minnesota Press, pp. M15–M21.
Lehmann A, Leifheit EF, Rillig MC. 2017. “Mycorrhizas and Soil Aggregation.” In Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage. Johnson N, Gehring C, Jansa J, eds. Oxford, UK: Elsevier, pp. 241–62.
Leifheit EF, Veresoglou SD, Lehmann A, Morris KE, Rillig MC. 2014. Multiple factors influence the role of arbuscular mycorrhizal fungi in soil aggregation – a meta-analysis. Plant and Soil 374: 523–37.
Lekberg Y, Helgason T. 2018. In situ mycorrhizal function – knowledge gaps and future directions. New Phytologist 220: 957–62.
Leonhardt Y, Kakoschke S, Wagener J, Ebel F. 2017. Lah is a transmembrane protein and requires Spa10 for stable positioning of Woronin bodies at the septal pore of Aspergillus fumigatus. Scientific Reports 7: 44179.
Letcher A. 2006. Shroom: A Cultural History of the Magic Mushroom. London, UK: Faber and Faber.
Levin M. 2012. Morphogenetic fields in embryogenesis, regeneration, and cancer: non-local control of complex patterning. Biosystems 109: 243–61.
Levin M. 2011. The wisdom of the body: future techniques and approaches to morphogenetic fields in regenerative medicine, developmental biology and cancer. Regenerative Medicine 6: 667–73.
Levin SA. 2005. Self-organization and the emergence of complexity in ecological systems. BioScience 55: 1075–79.
Lévi-Strauss C. 1973. From Honey to Ashes: Introduction to a Science of Mythology, 2. New York, NY: Harper & Row.
Lewontin R. 2001. It Ain’t Necessarily So: The Dream of the Human Genome and Other Illusions. New York, NY: New York Review of Books.
Lewontin R. 2000. The Triple Helix: Gene, Organism, and Environment. Cambridge, MA: Harvard University Press.
Li N, Alfiky A, Vaughan MM, Kang S. 2016. Stop and smell the fungi: fungal volatile metabolites are overlooked signals involved in fungal interaction with plants. Fungal Biology Reviews 30: 134–44.
Li Q, Yan L, Ye L, Zhou J, Zhang B, Peng W, Zhang X, Li X. 2018. Chinese black truffle (Tuber indicum) alters the ectomycorrhizosphere and endoectomycosphere microbiome and metabolic profiles of the host tree Quercus aliena. Frontiers in Microbiology 9: 2202.
Lindahl B, Finlay R, Olsson S. 2001. Simultaneous, bidirectional translocation of 32P and 33P between wood blocks connected by mycelial cords of Hypholoma fasciculare. New Phytologist 150: 189–94.
Linnakoski R, Reshamwala D, Veteli P, Cortina-Escribano M, Vanhanen H, Marjomäki V. 2018. Antiviral agents from fungi: diversity, mechanisms and potential applications. Frontiers in Microbiology 9: 2325.
Lintott C. 2019. The Crowd and the Cosmos: Adventures in the Zooniverse. Oxford, UK: Oxford University Press.
Lipnicki LI. 2015. The role of symbiosis in the transition of some eukaryotes from aquatic to terrestrial environments. Symbiosis 65: 39–53.
Liu J, Martinez-Corral R, Prindle A, Lee D-YD, Larkin J, Gabalda-Sagarra M, Garcia-Ojalvo J, Süel GM. 2017. Coupling between distant biofilms and emergence of nutrient time-sharing. Science 356: 638–42.
Lohberger A, Spangenberg JE, Ventura Y, Bindschedler S, Verrecchia EP, Bshary R, Junier P. 2019. Effect of organic carbon and nitrogen on the interactions of Morchella spp. and bacteria dispersing on their mycelium. Frontiers in Microbiology 10: 124.
Löpez-Franco R, Bracker CE. 1996. Diversity and dynamics of the Spitzenkörper in growing hyphal tips of higher fungi. Protoplasma 195: 90–111.
Loron CC, François C, Rainbird RH, Turner EC, Borensztajn S, Javaux EJ. 2019. Early fungi from the Proterozoic era in Arctic Canada. Nature 570: 232–35.
Lovett B, Bilgo E, Millogo S, Ouattarra A, Sare I, Gnambani E, Dabire RK, Diabate A, Leger RJ. 2019. Transgenic Metarhizium rapidly kills mosquitoes in a malaria-endemic region of Burkina Faso. Science 364: 894–97.
Lu C, Yu Z, Tian H, Hennessy DA, Feng H, Al-Kaisi M, Zhou Y, Sauer T, Arritt R. 2018. Increasing carbon footprint of grain crop production in the US Western Corn Belt. Environmental Research Letters 13: 124007.
Luo J, Chen X, Crump J, Zhou H, Davies DG, Zhou G, Zhang N, Jin C. 2018. Interactions of fungi with concrete: Significant importance for bio-based self-healing concrete. Construction and Building Materials 164: 275–85.
Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Arnold EA, Lewis LA, Swofford DL, Hibbett D, et al. 2018. Contemporaneous radiations of fungi and plants linked to symbiosis. Nature Communications 9: 5451.
Lutzoni F, Pagel M, Reeb V. 2001. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411: 937–40.
Ly C, Greb AC, Cameron LP, Wong JM, Barragan EV, Wilson PC, Burbach KF, Zarandi S, Sood A, Paddy MR, et al. 2018. Psychedelics promote structural and functional neural plasticity. Cell Reports 23: 3170–182.
Lyons T, Carhart-Harris RL. 2018. Increased nature relatedness and decreased authoritarian political views after psilocybin for treatment-resistant depression. Journal of Psychopharmacology 32: 811–19.
Ma Z, Guo D, Xu X, Lu M, Bardgett RD, Eissenstat DM, McCormack LM, Hedin LO. 2018. Evolutionary history resolves global organization of root functional traits. Nature 555: 94–97.
MacLean KA, Johnson MW, Griffiths RR. 2011. Mystical experiences occasioned by the hallucinogen psilocybin lead to increases in the personality domain of openness. Journal of Psychopharmacology 25: 1453–461.
Mangold CA, Ishler MJ, Loreto RG, Hazen ML, Hughes DP. 2019. Zombie ant death grip due to hypercontracted mandibular muscles. Journal of Experimental Biology 222: jeb200683.
Manicka S, Levin M. 2019. The Cognitive Lens: a primer on conceptual tools for analysing information processing in developmental and regenerative morphogenesis. Philosophical Transactions of the Royal Society B 374: 20180369.
Manoharan L, Rosenstock NP, Williams A, Hedlund K. 2017. Agricultural management practices influence AMF diversity and community composition with cascading effects on plant productivity. Applied Soil Ecology 115: 53–59.
Mardhiah U, Caruso T, Gurnell A, Rillig MC. 2016. Arbuscular mycorrhizal fungal hyphae reduce soil erosion by surface water flow in a greenhouse experiment. Applied Soil Ecology 99: 137–40.
Margonelli L. 2018. Underbug: An Obsessive Tale of Termites and Technology. New York, NY: Farrar, Straus and Giroux.
Margulis L. 1996. “Gaia Is a Tough Bitch.” In The Third Culture: Beyond the Scientific Revolution. John Brockman, ed. New York, NY: Touchstone.
Margulis L. 1981. Symbiosis in Cell Evolution: Life and Its Environment on the Early Earth. San Francisco, CA: W. H. Freeman and Company.
Margulis L. 1999. The Symbiotic Planet: A New Look at Evolution. London, UK: Phoenix.
Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez C, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, et al. 2015. Reconstruction and simulation of neocortical microcircuitry. Cell 163: 456–92.
Marley G. 2010. Chanterelle Dreams, Amanita Nightmares: The Love, Lore, and Mystique of Mushrooms. White River Junction, VT: Chelsea Green Publishing Company.
Márquez LM, Redman RS, Rodriguez RJ, Roossinck MJ. 2007. A virus in a fungus in a plant: three-way symbiosis required for thermal tolerance. Science 315: 513–15.
Martin FM, Uroz S, Barker DG. 2017. Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria. Science 356: eaad4501.
Martinez-Corral R, Liu J, Prindle A, Süel GM, Garcia-Ojalvo J. 2019. Metabolic basis of brain-like electrical signalling in bacterial communities. Philosophical Transactions of the Royal Society B 374: 20180382.
Martínez-García LB, De Deyn GB, Pugnaire FI, Kothamasi D, van der Heijden MG. 2017. Symbiotic soil fungi enhance ecosystem resilience to climate change. Global Change Biology 23: 5228–236.
Masiulionis VE, Weber RW, Pagnocca FC. 2013. Foraging of Psilocybe basidiocarps by the leaf-cutting ant Acromyrmex lobicornis in Santa Fé, Argentina. SpringerPlus 2: 254.
Mateus ID, Masclaux FG, Aletti C, Rojas EC, Savary R, Dupuis C, Sanders IR. 2019. Dual RNA-seq reveals large-scale non-conserved genotype × genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis. The ISME Journal 13: 1226–238.
Matossian MK. 1982. Ergot and the Salem Witchcraft Affair: An outbreak of a type of food poisoning known as convulsive ergotism may have led to the 1692 accusations of witchcraft. American Scientist 70: 355–57.
Matsuura K, Yashiro T, Shimizu K, Tatsumi S, Tamura T. 2009. Cuckoo fungus mimics termite eggs by producing the cellulose-digesting enzyme β-Glucosidase. Current Biology 19: 30–36.
Matsuura Y, Moriyama M, Łukasik P, Vanderpool D, Tanahashi M, Meng X-Y, McCutcheon JP, Fukatsu T. 2018. Recurrent symbiont recruitment from fungal parasites in cicadas. Proceedings of the National Academy of Sciences 115: E5970–E5979.
Maugh TH. 1982. The scent makes sense. Science 215: 1224.
Maxman A. 2019. CRISPR might be the banana’s only hope against a deadly fungus. Nature: www.nature.com/articles/d41586-019-02770-7 [accessed October 29, 2019].
Mazur S. 2009. Lynn Margulis: Intimacy of Strangers & Natural Selection. Scoop: www.scoop.co.nz/stories/HL0903/S00194/lynn-margulis-intimacy-of-strangers-natural-selection.htm [accessed October 29, 2019].
Mazzucato L, Camera LG, Fontanini A. 2019. Expectation-induced modulation of metastable activity underlies faster coding of sensory stimuli. Nature Neuroscience 22: 787–796.
McCoy P. 2016. Radical Mycology: A Treatise on Working and Seeing with Fungi. Portland, OR: Chthaeus Press.
McFall-Ngai M. 2007. Adaptive Immunity: Care for the community. Nature 445: 153.
McGann JP. 2017. Poor human olfaction is a 19th-century myth. Science 356: eaam7263.
McGuire KL. 2007. Common ectomycorrhizal networks may maintain monodominance in a tropical rain forest. Ecology 88: 567–74.
McKenna D. 2012. Brotherhood of the Screaming Abyss. Clearwater, MN: North Star Press of St. Cloud Inc.
McKenna T. 1992. Food of the Gods: The Search for the Original Tree of Knowledge. New York, NY: Bantam Books.
McKenna T, McKenna D (Oss OT, Oeric ON). 1976. Psilocybin: Magic Mushroom Grower’s Guide. Berkeley, CA: AND/OR Press.
McKenzie RN, Horton BK, Loomis SE, Stockli DF, Planavsky NJ, Lee C-TA. 2016. Continental arc volcanism as the principal driver of icehouse-greenhouse variability. Science 352: 444–47.
McKerracher L, Heath I. 1986a. Fungal nuclear behavior analysed by ultraviolet microbeam irradiation. Cell Motility and the Cytoskeleton 6: 35–47.
McKerracher L, Heath I. 1986b. Polarized cytoplasmic movement and inhibition of saltations induced by calcium-mediated effects of microbeams in fungal hyphae. Cell Motility and the Cytoskeleton 6: 136–45.
Meeßen J, Backhaus T, Brandt A, Raguse M, Böttger U, de Vera JP, de la Torre R. 2017. The effect of high-dose ionizing radiation on the isolated photobiont of the astrobiological model lichen Circinaria gyrosa. Astrobiology 17: 154–62.
Mejía LC, Herre EA, Sparks JP, Winter K, García MN, Bael SA, Stitt J, Shi Z, Zhang Y, Guiltinan MJ, et al. 2014. Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree. Frontiers in Microbiology 5: 479.
Merckx V. 2013. “Mycoheterotrophy: An Introduction.” In Mycoheterotrophy – The Biology of Plants Living on Fungi. Merckx V, ed. Springer International Publishing, pp. 1–18.
Merleau-Ponty M. 2002. Phenomenology of Perception. London, UK: Routledge Classics.
Meskkauskas A, McNulty LJ, Moore D. 2004. Concerted regulation of all hyphal tips generates fungal fruit body structures: experiments with computer visualizations produced by a new mathematical model of hyphal growth. Mycological Research 108: 341–53.
Metzner R. 2005. “Introduction: Visionary Mushrooms of the Americas.” In Sacred Mushroom of Visions: Teonanacatl. Metzner R, ed. Rochester, VT: Park Street Press, pp. 1–48.
Miller MJ, Albarracin-Jordan J, Moore C, Capriles JM. 2019. Chemical evidence for the use of multiple psychotropic plants in a 1,000-year-old ritual bundle from South America. Proceedings of the National Academy of Sciences 116: 11207–212.
Mills BJ, Batterman SA, Field KJ. 2017. Nutrient acquisition by symbiotic fungi governs Palaeozoic climate transition. Philosophical Transactions of the Royal Society B 373: 20160503.
Milner DS, Attah V, Cook E, Maguire F, Savory FR, Morrison M, Müller CA, Foster PG, Talbot NJ, Leonard G, et al. 2019. Environment-dependent fitness gains can be driven by horizontal gene transfer of transporter-encoding genes. Proceedings of the National Academy of Sciences 116: 201815994.
Moeller HV, Neubert MG. 2016. Multiple friends with benefits: an optimal mutualist management strategy? The American Naturalist 187: E1–E12.
Mohajeri HM, Brummer RJ, Rastall RA, Weersma RK, Harmsen HJ, Faas M, Eggersdorfer M. 2018. The role of the microbiome for human health: from basic science to clinical applications. European Journal of Nutrition 57: 1–14.
Mohan JE, Cowden CC, Baas P, Dawadi A, Frankson PT, Helmick K, Hughes E, Khan S, Lang A, Machmuller M, et al. 2014. Mycorrhizal fungi mediation of terrestrial ecosystem responses to global change: mini-review. Fungal Ecology 10: 3–19.
Moisan K, Cordovez V, van de Zande EM, Raaijmakers JM, Dicke M, Lucas-Barbosa D. 2019. Volatiles of pathogenic and non-pathogenic soil-borne fungi affect plant development and resistance to insects. Oecologia 190: 589–604.
Monaco E. 2017. The Secret History of Paris’s Catacomb Mushrooms. Atlas Obscura: www.atlasobscura.com/articles/paris-catacomb-mushrooms [accessed October 29, 2019].
Mondo SJ, Lastovetsky OA, Gaspar ML, Schwardt NH, Barber CC, Riley R, Sun H, Grigoriev IV, Pawlowska TE. 2017. Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi. Nature Communications 8: 1843.
Money NP. 2013. Against the naming of fungi. Fungal Biology 117: 463–65.
Money NP. 2004a. The fungal dining habit: a biomechanical perspective. Mycologist 18: 71–76.
Money NP. 2016. Fungi: A Very Short Introduction. Oxford, UK: Oxford University Press.
Money NP. 1999. Fungus punches its way in. Nature 401: 332–33.
Money NP. 1998. More g’s than the Space Shuttle: ballistospore discharge. Mycologia 90: 547.
Money NP. 2018. The Rise of Yeast. Oxford, UK: Oxford University Press.
Money NP. 2004b. Theoretical biology: mushrooms in cyberspace. Nature 431: 32.
Money NP. 2007. Triumph of the Fungi: A Rotten History. Oxford, UK: Oxford University Press.
Montañez I. 2016. A Late Paleozoic climate window of opportunity. Proceedings of the National Academy of Sciences 113: 2334–336.
Montiel-Castro AJ, González-Cervantes RM, Bravo-Ruiseco G, Pacheco-López G. 2013. The microbiota-gut-brain axis: neurobehavioral correlates, health and sociality. Frontiers in Integrative Neuroscience 7: 70.
Moore D. 2013a. Fungal Biology in the Origin and Emergence of Life. Cambridge, UK: Cambridge University Press.
Moore D. 1996. Graviresponses in fungi. Advances in Space Research 17: 73–82.
Moore D. 2005. Principles of mushroom developmental biology. International Journal of Medicinal Mushrooms 7: 79–101.
Moore, D. 2013b. Slayers, Saviors, Servants, and Sex: An Exposé of Kingdom Fungi. Springer International Publishing.
Moore D, Hock B, Greening JP, Kern VD, Frazer L, Monzer J. 1996. Gravimorphogenesis in agarics. Mycological Research 100: 257–73.
Moore D, Robson GD, Trinci APJ. 2011. 21st Century Guidebook to Fungi. Cambridge, UK: Cambridge University Press.
Mousavi SA, Chauvin A, Pascaud F, Kellenberger S, Farmer EE. 2013. GLUTAMATE RECEPTOR-LIKE genes mediate leaf-to-leaf wound signalling. Nature 500: 422–26.
Muday GK, Brown-Harding H. 2018. Nervous system-like signaling in plant defense. Science 361: 1068–69.
Mueller RC, Scudder CM, Whitham TG, Gehring CA. 2019. Legacy effects of tree mortality mediated by ectomycorrhizal fungal communities. New Phytologist 224: 155–65.
Muir J. 1912. The Yosemite. New York, NY: The Century Company. vault.sierraclub.org/john_muir_exhibit/writings/the_yosemite/ [accessed October 29, 2019].
Myers N. 2014. Conversations on plant sensing: notes from the field. NatureCulture 3: 35–66.
Naef R. 2011. The volatile and semi-volatile constituents of agarwood, the infected heartwood of Aquilaria species: a review. Flavour and Fragrance Journal 26: 73–87.
Nakagaki T, Yamada H, Tóth A. 2000. Maze-solving by an amoeboid organism. Nature 407: 470.
Nelson ML, Dinardo A, Hochberg J, Armelagos GJ. 2010. Mass spectroscopic characterization of tetracycline in the skeletal remains of an ancient population from Sudanese Nubia 350–55 °CE. American Journal of Physical Anthropology 143: 151–54.
Nelsen MP, DiMichele WA, Peters SE, Boyce KC. 2016. Delayed fungal evolution did not cause the Paleozoic peak in coal production. Proceedings of the National Academy of Sciences 113: 2442–447.
Newman EI. 1988. Mycorrhizal links between plants: their functioning and ecological significance. Advances in Ecological Research 18: 243–70.
Nikolova I, Johanson KJ, Dahlberg A. 1997. Radiocaesium in fruitbodies and mycorrhizae in ectomycorrhizal fungi. Journal of Environmental Radioactivity 37: 115–25.
Niksic M, Hadzic I, Glisic M. 2004. Is Phallus impudicus a mycological giant? Mycologist 18: 21–22.
Noë R, Hammerstein P. 1995. Biological markets. Trends in Ecology & Evolution 10: 336–39.
Noë R, Kiers TE. 2018. Mycorrhizal Markets, Firms, and Co-ops. Trends in Ecology & Evolution 33: 777–89.
Nordbring-Hertz B. 2004. Morphogenesis in the nematode-trapping fungus Arthrobotrys oligospora—an extensive plasticity of infection structures. Mycologist 18: 125–33.
Nordbring-Hertz B, Jansson H, Tunlid A. 2011. “Nematophagous Fungi.” In Encyclopedia of Life Sciences. Chichester, UK: John Wiley & Sons Ltd.
Novikova N, Boever P, Poddubko S, Deshevaya E, Polikarpov N, Rakova N, Coninx I, Mergeay M. 2006. Survey of environmental biocontamination on board the International Space Station. Research in Microbiology 157: 5–12.
Oettmeier C, Brix K, Döbereiner H-G. 2017. Physarum polycephalum—a new take on a classic model system. Journal of Physics D: Applied Physics 50: 41.
Oliveira AG, Stevani CV, Waldenmaier HE, Viviani V, Emerson JM, Loros JJ, Dunlap JC. 2015. Circadian control sheds light on fungal bioluminescence. Current Biology 25: 964–68.
Olsson S. 2009. “Nutrient Translocation and Electrical Signalling in Mycelia.” In The Fungal Colony. Gow NAR, Robson GD, Gadd GM, eds. Cambridge, UK: Cambridge University Press, pp. 25–48.
Olsson S, Hansson B. 1995. Action potential – like activity found in fungal mycelia is sensitive to stimulation. Naturwissenschaften 82: 30–31.
O’Malley MA. 2015. Endosymbiosis and its implications for evolutionary theory. Proceedings of the National Academy of Sciences 112: 10270–277.
Oolbekkink GT, Kuyper TW. 1989. Radioactive caesium from Chernobyl in fungi. Mycologist 3: 3–6.
O’Regan HJ, Lamb AL, Wilkinson DM. 2016. The missing mushrooms: Searching for fungi in ancient human dietary analysis. Journal of Archaeological Science 75: 139–43.
Orrell P. 2018. Linking Above and Below-Ground Interactions in Agro-Ecosystems: An Ecological Network Approach. PhD thesis, University of Newcastle, Newcastle, UK. theses.ncl.ac.uk/jspui/handle/10443/4102 [accessed October 29, 2019].
Osborne OG, De-Kayne R, Bidartondo MI, Hutton I, Baker WJ, Turnbull CG, Savolainen V. 2018. Arbuscular mycorrhizal fungi promote coexistence and niche divergence of sympatric palm species on a remote oceanic island. New Phytologist 217: 1254–266.
Ott J. 2002. Pharmaka, philtres, and pheromones. Getting high and getting off. MAPS XII: 26–32.
Otto S, Bruni EP, Harms H, Wick LY. 2017. Catch me if you can: dispersal and foraging of Bdellovibrio bacteriovorus 109J along mycelia. The ISME Journal 11: 386–93.
Ouellette NT. 2019. Flowing crowds. Science 363: 27–28.
Oukarroum A, Gharous M, Strasser RJ. 2017. Does Parmelina tiliacea lichen photosystem II survive at liquid nitrogen temperatures? Cryobiology 74: 160–62.
Ovid. 1958. Ovid: The Metamorphoses. Gregory H., trans. New York, NY: Viking Press.
Pagán OR. 2019. The brain: a concept in flux. Philosophical Transactions of the Royal Society B 374: 20180383.
Paglia C. 2001. Sexual Personae: Art and Decadence from Nefertiti to Emily Dickinson. New Haven, CT: Yale University Press.
Pan X, Pike A, Joshi D, Bian G, McFadden MJ, Lu P, Liang X, Zhang F, Raikhel AS, Xi Z. 2017. The bacterium Wolbachia exploits host innate immunity to establish a symbiotic relationship with the dengue vector mosquito Aedes aegypti. The ISME Journal 12: 277–88.
Patra S, Banerjee S, Terejanu G, Chanda A. 2015. Subsurface pressure profiling: a novel mathematical paradigm for computing colony pressures on substrate during fungal infections. Scientific Reports 5: 12928.
Peay KG. 2016. The mutualistic niche: mycorrhizal symbiosis and community dynamics. Annual Review of Ecology, Evolution, and Systematics 47: 1–22.
Peay KG, Kennedy PG, Talbot JM. 2016. Dimensions of biodiversity in the Earth mycobiome. Nature Reviews Microbiology 14: 434–47.
Peintner U, Poder R, Pumpel T. 1998. The iceman’s fungi. Mycological Research 102: 1153–162.
Pennazza G, Fanali C, Santonico M, Dugo L, Cucchiarini L, Dachà M, D’Amico A, Costa R, Dugo P, Mondello L. 2013. Electronic nose and GC – MS analysis of volatile compounds in Tuber magnatum Pico: Evaluation of different storage conditions. Food Chemistry 136: 668–74.
Pennisi E. 2019a. Algae suggest eukaryotes get many gifts of bacteria DNA. Science 363: 439–40.
Pennisi E. 2019b. Chemicals released by bacteria may help gut control the brain, mouse study suggests. Science: www.sciencemag.org/news/2019/10/chemicals-released-bacteria-may-help-gut-control-brain-mouse-study-suggests [accessed October 29, 2019].
Peris JE, Rodríguez A, Peña L, Fedriani J. 2017. Fungal infestation boosts fruit aroma and fruit removal by mammals and birds. Scientific Reports 7: 5646.
Perrottet T. 2006. Mt. Rushmore. Smithsonian Magazine: www.smithsonianmag.com/travel/mt-rushmore-116396890/ [accessed October 29, 2019].
Petri G, Expert P, Turkheimer F, Carhart-Harris R, Nutt D, Hellyer P, Vaccarino F. 2014. Homological scaffolds of brain functional networks. Journal of The Royal Society Interface 11: 20140873.
Pfeffer C, Larsen S, Song J, Dong M, Besenbacher F, Meyer R, Kjeldsen K, Schreiber L, Gorby YA, El-Naggar MY, et al. 2012. Filamentous bacteria transport electrons over centimetre distances. Nature 491: 218–21.
Phillips RP, Brzostek E, Midgley MG. 2013. The mycorrhizal-associated nutrient economy: a new framework for predicting carbon – nutrient couplings in temperate forests. New Phytologist 199: 41–51.
Pickles B, Egger K, Massicotte H, Green D. 2012. Ectomycorrhizas and climate change. Fungal Ecology 5: 73–84.
Pickles BJ, Wilhelm R, Asay AK, Hahn AS, Simard SW, Mohn WW. 2017. Transfer of 13C between paired Douglas-fir seedlings reveals plant kinship effects and uptake of exudates by ectomycorrhizas. New Phytologist 214: 400–11.
Pion M, Spangenberg J, Simon A, Bindschedler S, Flury C, Chatelain A, Bshary R, Job D, Junier P. 2013. Bacterial farming by the fungus Morchella crassipes. Proceedings of the Royal Society B 280: 20132242.
Pirozynski KA, Malloch DW. 1975. The origin of land plants: A matter of mycotrophism. Biosystems 6: 153–64.
Pither J, Pickles BJ, Simard SW, Ordonez A, Williams JW. 2018. Below-ground biotic interactions moderated the postglacial range dynamics of trees. New Phytologist 220: 1148–160.
Policha T, Davis A, Barnadas M, Dentinger BT, Raguso RA, Roy BA. 2016. Disentangling visual and olfactory signals in mushroom-mimicking Dracula orchids using realistic three-dimensional printed flowers. New Phytologist 210: 1058–71.
Pollan M. 2018. How to Change Your Mind: The New Science of Psychedelics. London, UK: Penguin.
Pollan M. 2013. The Intelligent Plant. The New Yorker: michaelpollan.com/articles-archive/the-intelligent-plant/ [accessed October 29, 2019].
Popkin G. 2017. Bacteria Use Brainlike Bursts of Electricity to Communicate. Quanta: www.quantamagazine.org/bacteria-use-brainlike-bursts-of-electricity-to-communicate-20170905/ [accessed October 29, 2019].
Porada P, Weber B, Elbert W, Pöschl U, Kleidon A. 2014. Estimating impacts of lichens and bryophytes on global biogeochemical cycles. Global Biogeochemical Cycles 28: 71–85.
Potts SG, Biesmeijer JC, Kremen C, Neumann P, Schweiger O, Kunin WE. 2010. Global pollinator declines: trends, impacts and drivers. Trends in Ecology & Evolution 25: 345–53.
Poulsen M, Hu H, Li C, Chen Z, Xu L, Otani S, Nygaard S, Nobre T, Klaubauf S, Schindler PM, et al. 2014. Complementary symbiont contributions to plant decomposition in a fungus-farming termite. Proceedings of the National Academy of Sciences 111: 14500–505.
Powell JR, Rillig MC. 2018. Biodiversity of arbuscular mycorrhizal fungi and ecosystem function. New Phytologist 220: 1059–75.
Powell M. 2014. Medicinal Mushrooms: A Clinical Guide. Bath, UK: Mycology Press.
Pozo MJ, López-Ráez JA, Azcón-Aguilar C, García-Garrido JM. 2015. Phytohormones as integrators of environmental signals in the regulation of mycorrhizal symbioses. New Phytologist 205: 1431–436.
Prasad S. 2018. An ingenious way to combat India’s suffocating pollution. The Washington Post: www.washingtonpost.com/news/theworldpost/wp/2018/08/01/india-pollution/ [accessed October 29, 2019].
Pressel S, Bidartondo MI, Ligrone R, Duckett JG. 2010. Fungal symbioses in bryophytes: New insights in the Twenty First Century. Phytotaxa 9: 238–53.
Prigogine I, Stengers I. 1984. Order Out of Chaos: Man’s New Dialogue with Nature. New York, NY: Bantam Books.
Prindle A, Liu J, Asally M, Ly S, Garcia-Ojalvo J, Süel GM. 2015. Ion channels enable electrical communication in bacterial communities. Nature 527: 59–63.
Purschwitz J, Müller S, Kastner C, Fischer R. 2006. Seeing the rainbow: light sensing in fungi. Current Opinion in Microbiology 9: 566–71.
Quéré C, Andrew RM, Friedlingstein P, Sitch S, Hauck J, Pongratz J, Pickers P, Korsbakken J, Peters GP, Canadell JG, et al. 2018. Global Carbon Budget 2018. Earth System Science Data Discussions: https://doi.org/10:5194/essd-2018-120 [accessed October 29, 2019].
Quintana-Rodriguez E, Rivera-Macias LE, Adame-Alvarez RM, Torres J, Heil M. 2018. Shared weapons in fungus-fungus and fungus-plant interactions? Volatile organic compounds of plant or fungal origin exert direct antifungal activity in vitro. Fungal Ecology 33: 115–21.
Quirk J, Andrews M, Leake J, Banwart S, Beerling D. 2014. Ectomycorrhizal fungi and past high CO2 atmospheres enhance mineral weathering through increased below-ground carbon-energy fluxes. Biology Letters 10: 20140375.
Rabbow E, Horneck G, Rettberg P, Schott J-U, Panitz C, L’Afflitto A, Heise-Rotenburg von R, Willnecker R, Baglioni P, Hatton J, et al. 2009. EXPOSE, an astrobiological exposure facility on the International Space Station – from proposal to flight. Origins of Life and Evolution of Biospheres 39: 581–98.
Raes J. 2017. Crowdsourcing Earth’s microbes. Nature 551: 446–47.
Rambold G, Stadler M, Begerow D. 2013. Mycology should be recognized as a field in biology at eye level with other major disciplines – a memorandum. Mycological Progress 12: 455–63.
Ramsbottom J. 1953. Mushrooms and Toadstools. London, UK: Collins.
Raverat G. 1952. Period Piece: A Cambridge Childhood. London, UK: Faber.
Rayner A. 1997. Degrees of Freedom. London, UK: World Scientific.
Rayner A, Griffiths GS, Ainsworth AM. 1995. Mycelial Interconnectedness. In The Growing Fungus. Gow NAR, Gadd GM, eds. London, UK: Chapman & Hall, pp. 21–40.
Rayner M. 1945. Trees and Toadstools. London, UK: Faber and Faber.
Read D. 1997. Mycorrhizal fungi: The ties that bind. Nature 388: 517–18.
Read N. 2018. “Fungal cell structure and organization.” In Oxford Textbook of Medical Mycology. Kibbler CC, Barton R, Gow NAR, Howell S, MacCallum DM, Manuel RJ, eds. Oxford, UK: Oxford University Press, pp. 23–34.
Read ND, Lichius A, Shoji J, Goryachev AB. 2009. Self-signalling and self-fusion in filamentous fungi. Current Opinion in Microbiology 12: 608–15.
Redman RS, Rodriguez RJ. 2017. “The Symbiotic Tango: Achieving Climate-Resilient Crops Via Mutualistic Plant-Fungus Relationships.” In Functional Importance of the Plant Microbiome, Implications for Agriculture, Forestry and Bioenergy. Doty S, ed. Springer International Publishing, pp. 71–87.
Rees B, Shepherd VA, Ashford AE. 1994. Presence of a motile tubular vacuole system in different phyla of fungi. Mycological Research 98: 985–92.
Reid CR, Latty T, Dussutour A, Beekman M. 2012. Slime mold uses an externalized spatial “memory” to navigate in complex environments. Proceedings of the National Academy of Sciences 109: 17490–494.
Relman DA. 2008. “Til death do us part”: coming to terms with symbiotic relationships. Forward. Nature Reviews Microbiology 6: 721–24.
Reynaga-Peña CG, Bartnicki-García S. 2005. Cytoplasmic contractions in growing fungal hyphae and their morphogenetic consequences. Archives of Microbiology 183: 292–300.
Reynolds HT, Vijayakumar V, Gluck-Thaler E, Korotkin H, Matheny P, Slot JC. 2018. Horizontal gene cluster transfer increased hallucinogenic mushroom diversity. Evolution Letters 2: 88–101.
Rich A. 1994. “Notes Toward a Politics of Location.” In Blood, Bread, and Poetry: Selected Prose, 1979–1985. New York, NY: W. W. Norton.
Richards TA, Leonard G, Soanes DM, Talbot NJ. 2011. Gene transfer into the fungi. Fungal Biology Reviews 25: 98–110.
Rillig MC, Aguilar-Trigueros CA, Camenzind T, Cavagnaro TR, Degrune F, Hohmann P, Lammel DR, Mansour I, Roy J, van der Heijden MG, et al. 2019. Why farmers should manage the arbuscular mycorrhizal symbiosis: A response to Ryan & Graham (2018) “Little evidence that farmers should consider abundance or diversity of arbuscular mycorrhizal fungi when managing crops.” New Phytologist 222: 1171–175.
Rillig MC, Lehmann A, Lehmann J, Camenzind T, Rauh C. 2018. Soil Biodiversity Effects from Field to Fork. Trends in Plant Science 23: 17–24.
Riquelme M. 2012. Tip growth in filamentous fungi: a road trip to the apex. Microbiology 67: 587–609.
Ritz K, Young I. 2004. Interactions between soil structure and fungi. Mycologist 18: 52–59.
Robinson JM. 1990. Lignin, land plants, and fungi: Biological evolution affecting Phanerozoic oxygen balance. Geology 18: 607–10.
Rodriguez R, White JF, Arnold A, Redman R. 2009. Fungal endophytes: diversity and functional roles. New Phytologist 182: 314–30.
Rodriguez-Romero J, Hedtke M, Kastner C, Müller S, Fischer R. 2010. Fungi, hidden in soil or up in the air: light makes a difference. Microbiology 64: 585–610.
Rogers R. 2012. The Fungal Pharmacy. Berkeley, CA: North Atlantic Books.
Roper M, Dressaire E. 2019. Fungal biology: bidirectional communication across fungal networks. Current Biology 29: R130–R132.
Roper M, Lee C, Hickey PC, Gladfelter AS. 2015. Life as a moving fluid: fate of cytoplasmic macromolecules in dynamic fungal syncytia. Current Opinion in Microbiology 26: 116–22.
Roper M, Seminara A. 2017. Mycofluidics: the fluid mechanics of fungal adaptation. Annual Review of Fluid Mechanics 51: 1–28.
Roper M, Seminara A, Bandi M, Cobb A, Dillard HR, Pringle A. 2010. Dispersal of fungal spores on a cooperatively generated wind. Proceedings of the National Academy of Sciences 107: 17474–479.
Roper M, Simonin A, Hickey PC, Leeder A, Glass LN. 2013. Nuclear dynamics in a fungal chimera. Proceedings of the National Academy of Sciences 110: 12875–880.
Ross AA, Müller KM, Weese JS, Neufeld JD. 2018. Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia. Proceedings of the National Academy of Sciences 115: E5786–E5795.
Ross S, Bossis A, Guss J, Agin-Liebes G, Malone T, Cohen B, Mennenga S, Belser A, Kalliontzi K, Babb J, et al. 2016. Rapid and sustained symptom reduction following psilocybin treatment for anxiety and depression in patients with life-threatening cancer: a randomized controlled trial. Journal of Psychopharmacology 30: 1165–180.
Roughgarden J. 2013. Evolution’s Rainbow. Berkeley, CA: University of California Press.
Rouphael Y, Franken P, Schneider C, Schwarz D, Giovannetti M, Agnolucci M, Pascale S, Bonini P, Colla G. 2015. Arbuscular mycorrhizal fungi act as biostimulants in horticultural crops. Scientia Horticulturae 196: 91–108.
Rubini A, Riccioni C, Arcioni S, Paolocci F. 2007. Troubles with truffles: unveiling more of their biology. New Phytologist 174: 256–59.
Russell B. 1956. Portraits from Memory and Other Essays. New York, NY: Simon and Schuster.
Ryan MH, Graham JH. 2018. Little evidence that farmers should consider abundance or diversity of arbuscular mycorrhizal fungi when managing crops. New Phytologist 220: 1092–107.
Sagan L. 1967. On the origin of mitosing cells. Journal of Theoretical Biology 14: 225–74.
Salvador-Recatalà V, Tjallingii FW, Farmer EE. 2014. Real-time, in vivo intracellular recordings of caterpillar-induced depolarization waves in sieve elements using aphid electrodes. New Phytologist 203: 674–84.
Sample I. 2018. Magma shift may have caused mysterious seismic wave event. The Guardian: www.theguardian.com/science/2018/nov/30/magma-shift-mysterious-seismic-wave-event-mayotte [accessed October 29, 2019].
Samorini G. 2002. Animals and Psychedelics: The Natural World and the Instinct to Alter Consciousness. Rochester, VT: Park Street Press.
Sancho LG, de la Torre R, Pintado A. 2008. Lichens, new and promising material from experiments in astrobiology. Fungal Biology Reviews 22: 103–9.
Sapp J. 2004. The dynamics of symbiosis: an historical overview. Canadian Journal of Botany 82: 1046–56.
Sapp J. 1994. Evolution by Association. Oxford, UK: Oxford University Press.
Sapp J. 2009. The New Foundations of Evolution. Oxford, UK: Oxford University Press.
Sapp J. 2016. The Symbiotic Self. Evolutionary Biology 43: 596–603.
Sapsford SJ, Paap T, Hardy GE, Burgess TI. 2017. The “chicken or the egg”: which comes first, forest tree decline or loss of mycorrhizae? Plant Ecology 218: 1093–106.
Sarrafchi A, Odhammer AM, Salazar L, Laska M. 2013. Olfactory sensitivity for six predator odorants in cd-1 mice, human subjects, and spider monkeys. PLOS ONE 8: e80621.
Saupe S. 2000. Molecular genetics of heterokaryon incompatibility in filamentous ascomycetes. Microbiology and Molecular Biology Reviews 64: 489–502.
Scharf C. 2016. How the Cold War Created Astrobiology. Nautilus: nautil.us/issue/32/space/how-the-cold-war-created-astrobiology-rp [accessed October 29, 2019].
Scharlemann JP, Tanner EV, Hiederer R, Kapos V. 2014. Global soil carbon: understanding and managing the largest terrestrial carbon pool. Carbon Management 5: 81–91.
Schenkel D, Maciá-Vicente JG, Bissell A, Splivallo R. 2018. Fungi indirectly affect plant root architecture by modulating soil volatile organic compounds. Frontiers in Microbiology 9: 1847.
Schmieder SS, Stanley CE, Rzepiela A, van Swaay D, Sabotič J, Nørrelykke SF, deMello AJ, Aebi M, Künzler M. 2019. Bidirectional propagation of signals and nutrients in fungal networks via specialized hyphae. Current Biology 29: 217–28.
Schmull M, Dal-Forno M, Lücking R, Cao S, Clardy J, Lawrey JD. 2014. Dictyonema huaorani (Agaricales: Hygrophoraceae), a new lichenized basidiomycete from Amazonian Ecuador with presumed hallucinogenic properties. The Bryologist 117: 386–94.
Schultes RE. 1940. Teonanacatl: The Narcotic Mushroom of the Aztecs. American Anthropologist 42: 429–43.
Schultes RE, Hofmann A, Rätsch C. 2001. Plants of the Gods: Their Sacred, Healing, and Hallucinogenic Powers. Rochester, VT: Healing Arts Press, 2nd edition.
Seaward M. 2008. “Environmental role of lichens.” In Lichen Biology. Nash TH, ed. Cambridge, UK: Cambridge University Press, pp. 274–98.
Selosse M-A. 2002. Prototaxites: a 400 Myr old giant fossil, a saprophytic holobasidiomycete, or a lichen? Mycological Research 106: 641–44.
Selosse M-A, Schneider-Maunoury L, Martos F. 2018. Time to re-think fungal ecology? Fungal ecological niches are often prejudged. New Phytologist 217: 968–72.
Selosse M-A, Schneider-Maunoury L, Taschen E, Rousset F, Richard F. 2017. Black truffle, a hermaphrodite with forced unisexual behaviour. Trends in Microbiology 25: 784–87.
Selosse M-A, Strullu-Derrien C, Martin FM, Kamoun S, Kenrick P. 2015. Plants, fungi and oomycetes: a 400-million year affair that shapes the biosphere. New Phytologist 206: 501–6.
Selosse M-A, Tacon LF. 1998. The land flora: a phototroph-fungus partnership? Trends in Ecology & Evolution 13: 15–20.
Sergeeva NG, Kopytina NI. 2014. The first marine filamentous fungi discovered in the bottom sediments of the oxic/anoxic interface and in the bathyal zone of the black sea. Turkish Journal of Fisheries and Aquatic Sciences 14: 497–505.
Sheldrake M, Rosenstock NP, Revillini D, Olsson PA, Wright SJ, Turner BL. 2017. A phosphorus threshold for mycoheterotrophic plants in tropical forests. Proceedings of the Royal Society B 284: 20162093.
Shepherd V, Orlovich D, Ashford A. 1993. Cell-to-cell transport via motile tubules in growing hyphae of a fungus. Journal of Cell Science 105: 1173–178.
Shomrat T, Levin M. 2013. An automated training paradigm reveals long-term memory in planarians and its persistence through head regeneration. Journal of Experimental Biology 216: 3799–810.
Shukla V, Joshi GP, Rawat MSM. 2010. Lichens as a potential natural source of bioactive compounds: a review. Phytochemical Reviews 9: 303–14.
Siegel RK. 2005. Intoxication: The Universal Drive for Mind-Altering Substances. Rochester, VT: Park Street Press.
Silvertown J. 2009. A new dawn for citizen science. Trends in Ecology & Evolution 24: 467–71.
Simard S. 2018. “Mycorrhizal Networks Facilitate Tree Communication, Learning, and Memory.” In Memory and Learning in Plants. Baluska F, Gagliano M, Witzany G, eds. Springer International Publishing, pp. 191–213.
Simard S, Asay A, Beiler K, Bingham M, Deslippe J, He X, Phillip L, Song Y, Teste F. 2015. “Resource Transfer Between Plants Through Ectomycorrhizal Fungal Networks.” In Mycorrhizal Networks. Horton T, ed. Springer International Publishing, pp. 133–76.
Simard S, Perry DA, Jones MD, Myrold DD, Durall DM, Molina R. 1997. Net transfer of carbon between ectomycorrhizal tree species in the field. Nature 388: 579–82.
Simard SW, Beiler KJ, Bingham MA, Deslippe JR, Philip LJ, Teste FP. 2012. Mycorrhizal networks: Mechanisms, ecology and modelling. Fungal Biology Reviews 26: 39–60.
Singh H. 2006. Mycoremediation. New York, NY: John Wiley & Sons.
Slayman C, Long W, Gradmann D. 1976. “Action potentials” in Neurospora crassa, a mycelial fungus. Biochimica et Biophysica Acta 426: 732–44.
Smith SE, Read DJ. 2008. Mycorrhizal Symbiosis. London, UK: Academic Press.
Solé R, Moses M, Forrest S. 2019. Liquid brains, solid brains. Philosophical Transactions of the Royal Society B 374: 20190040.
Soliman S, Greenwood JS, Bombarely A, Mueller LA, Tsao R, Mosser DD, Raizada MN. 2015. An endophyte constructs fungicide-containing extracellular barriers for its host plant. Current Biology 25: 2570–576.
Song Y, Simard SW, Carroll A, Mohn WW, Zeng R. 2015a. Defoliation of interior Douglas-fir elicits carbon transfer and stress signalling to ponderosa pine neighbors through ectomycorrhizal networks. Scientific Reports 5: 8495.
Song Y, Ye M, Li C, He X, Zhu-Salzman K, Wang R, Su Y, Luo S, Zeng R. 2015b. Hijacking common mycorrhizal networks for herbivore-induced defence signal transfer between tomato plants. Scientific Reports 4: 3915.
Song Y, Zeng R. 2010. Interplant communication of tomato plants through underground common mycorrhizal networks. PLOS ONE 5: e11324.
Southworth D, He X-H, Swenson W, Bledsoe C, Horwath W. 2005. Application of network theory to potential mycorrhizal networks. Mycorrhiza 15: 589–95.
Spanos NP, Gottleib J. 1976. Ergotism and the Salem village witch trials. Science 194: 1390–4.
Splivallo R, Fischer U, Göbel C, Feussner I, Karlovsky P. 2009. Truffles regulate plant root morphogenesis via the production of auxin and ethylene. Plant Physiology 150: 2018–29.
Splivallo R, Novero M, Bertea CM, Bossi S, Bonfante P. 2007. Truffle volatiles inhibit growth and induce an oxidative burst in Arabidopsis thaliana. New Phytologist 175: 417–24.
Splivallo R, Ottonello S, Mello A, Karlovsky P. 2011. Truffle volatiles: from chemical ecology to aroma biosynthesis. New Phytologist 189: 688–99.
Spribille T. 2018. Relative symbiont input and the lichen symbiotic outcome. Current Opinion in Plant Biology 44: 57–63.
Spribille T, Tuovinen V, Resl P, Vanderpool D, Wolinski H, Aime CM, Schneider K, Stabentheiner E, Toome-Heller M, Thor G, et al. 2016. Basidiomycete yeasts in the cortex of ascomycete macrolichens. Science 353: 488–92.
Stamets P. 2005. “Global Ecologies, World Distribution, and Relative Potency of Psilocybin Mushrooms.” In Sacred Mushroom of Visions: Teonanacatl. Metzner R, ed. Rochester, VT: Park Street Press, pp. 69–75.
Stamets P. 2011. Mycelium Running. Berkeley, CA: Ten Speed Press.
Stamets P. 1996. Psilocybin Mushrooms of the World. Berkeley, CA: Ten Speed Press.
Stamets PE, Naeger NL, Evans JD, Han JO, Hopkins BK, Lopez D, Moershel HM, Nally R, Sumerlin D, Taylor AW, et al. 2018. Extracts of polypore mushroom mycelia reduce viruses in honey bees. Scientific Reports 8: 13936.
State of the World’s Fungi. 2018. Royal Botanic Gardens, Kew, UK. stateoftheworldsfungi.org [accessed October 29, 2019].
Steele EJ, Al-Mufti S, Augustyn KA, Chandrajith R, Coghlan JP, Coulson SG, Ghosh S, Gillman M, Gorczynski RM, Klyce B, et al. 2018. Cause of Cambrian Explosion – Terrestrial or cosmic? Progress in Biophysics and Molecular Biology 136: 3–23.
Steidinger B, Crowther T, Liang J, Nuland VM, Werner G, Reich P, Nabuurs G, de-Miguel S, Zhou M, Picard N, et al. 2019. Climatic controls of decomposition drive the global biogeography of forest-tree symbioses. Nature 569: 404–8.
Steinberg G. 2007. Hyphal growth: a tale of motors, lipids, and the spitzenkörper. Eukaryotic Cell 6: 351–60.
Steinhardt JB. 2018. Mycelium is the Message: open science, ecological values, and alternative futures with do-it-yourself mycologists. PhD thesis, University of California, Santa Barbara, CA.
Stierle A, Strobel G, Stierle D. 1993. Taxol and taxane production by Taxomyces andreanae, an endophytic fungus of Pacific yew. Science 260: 214–16.
Stough JM, Yutin N, Chaban YV, Moniruzzaman M, Gann ER, Pound HL, Steffen MM, Black JN, Koonin EV, Wilhelm SW, et al. 2019. Genome and environmental activity of a chrysochromulina parva virus and its virophages. Frontiers in Microbiology 10: 703.
Strullu-Derrien C, Selosse M-A, Kenrick P, Martin FM. 2018. The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics. New Phytologist 220: 1012–30.
Studerus E, Kometer M, Hasler F, Vollenweider FX. 2011. Acute, subacute and long-term subjective effects of psilocybin in healthy humans: a pooled analysis of experimental studies. Journal of Psychopharmacology 25: 1434–452.
Stukeley W. 1752. Memoirs of Sir Isaac Newton’s Life. Unpublished, available from website of the Royal Society: ttp.royalsociety.org/ttp/ttp.html?id=1807da00-909a-4abf-b9c1-0279a08e4bf2&type=book [accessed October 29, 2019].
Suarato G, Bertorelli R, Athanassiou A. 2018. Borrowing from nature: biopolymers and biocomposites as smart wound care materials. Frontiers in Bioengineering and Biotechnology 6: 137.
Sudbery P, Gow N, Berman J. 2004. The distinct morphogenic states of Candida albicans. Trends in Microbiology 12: 317–24.
Swift RS. 2001. Sequestration of carbon by soil. Soil Science 166: 858–71.
Taiz L, Alkon D, Draguhn A, Murphy A, Blatt M, Hawes C, Thiel G, Robinson DG. 2019. Plants neither possess nor require consciousness. Trends in Plant Science 24: 677–87.
Takaki K, Yoshida K, Saito T, Kusaka T, Yamaguchi R, Takahashi K, Sakamoto Y. 2014. Effect of electrical stimulation on fruit body formation in cultivating mushrooms. Microorganisms 2: 58–72.
Talou T, Gaset A, Delmas M, Kulifaj M, Montant C. 1990. Dimethyl sulphide: the secret for black truffle hunting by animals? Mycological Research 94: 277–78.
Tanney JB, Visagie CM, Yilmaz N, Seifert KA. 2017. Aspergillus subgenus Polypaecilum from the built environment. Studies in Mycology 88: 237–67.
Taschen E, Rousset F, Sauve M, Benoit L, Dubois M-P, Richard F, Selosse M-A. 2016. How the truffle got its mate: insights from genetic structure in spontaneous and planted Mediterranean populations of Tuber melanosporum. Molecular Ecology 25: 5611–627.
Taylor A, Flatt A, Beutel M, Wolff M, Brownson K, Stamets P. 2015. Removal of Escherichia coli from synthetic stormwater using mycofiltration. Ecological Engineering 78: 79–86.
Taylor L, Leake J, Quirk J, Hardy K, Banwart S, Beerling D. 2009. Biological weathering and the long-term carbon cycle: integrating mycorrhizal evolution and function into the current paradigm. Geobiology 7: 171–91.
Taylor T, Klavins S, Krings M, Taylor E, Kerp H, Hass H. 2007. Fungi from the Rhynie chert: a view from the dark side. Transactions of the Royal Society of Edinburgh: Earth Sciences 94: 457–73.
Temple R. 2007. The prehistory of panspermia: astrophysical or metaphysical? International Journal of Astrobiology 6: 169–80.
Tero A, Takagi S, Saigusa T, Ito K, Bebber DP, Flicker MD, Yumiki K, Kobayashi R, Nakagaki T. 2010. Rules for biologically inspired adaptive network design. Science 327: 439–42.
Terrer C, Vicca S, Hungate BA, Phillips RP, Prentice IC. 2016. Mycorrhizal association as a primary control of the CO2 fertilization effect. Science 353: 72–74.
Thierry G. 2019. Lab-grown mini brains: we can’t dismiss the possibility that they could one day outsmart us. The Conversation: theconversation.com/lab-grown-mini-brains-we-cant-dismiss-the-possibility-that-they-could-one-day-outsmart-us-125842 [accessed October 29, 2019].
Thirkell TJ, Charters MD, Elliott AJ, Sait SM, Field KJ. 2017. Are mycorrhizal fungi our sustainable saviours? Considerations for achieving food security. Journal of Ecology 105: 921–29.
Thirkell TJ, Pastok D, Field KJ. 2019. Carbon for nutrient exchange between arbuscular mycorrhizal fungi and wheat varies according to cultivar and changes in atmospheric carbon dioxide concentration. Global Change Biology: DOI: 10:1111/gcb.14851.
Thomas P, Büntgen U. 2017. First harvest of Périgord black truffle in the UK as a result of climate change. Climate Research 74: 67–70.
Tilman D, Balzer C, Hill J, Befort BL. 2011. Global food demand and the sustainable intensification of agriculture. Proceedings of the National Academy of Sciences 108: 20260–264.
Tilman D, Cassman KG, Matson PA, Naylor R, Polasky S. 2002. Agricultural sustainability and intensive production practices. Nature 418: 671–77.
Tkavc R, Matrosova VY, Grichenko OE, Gostinčar C, Volpe RP, Klimenkova P, Gaidamakova EK, Zhou CE, Stewart BJ, Lyman MG, et al. 2018. Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149. Frontiers in Microbiology 8: 2528.
Tlalka M, Bebber DP, Darrah PR, Watkinson SC, Fricker MD. 2007. Emergence of self-organised oscillatory domains in fungal mycelia. Fungal Genetics and Biology 44: 1085–95.
Tlalka M, Hensman D, Darrah P, Watkinson S, Fricker MD. 2003. Noncircadian oscillations in amino acid transport have complementary profiles in assimilatory and foraging hyphae of Phanerochaete velutina. New Phytologist 158: 325–35.
Toju H, Guimarães PR, Olesen JM, Thompson JN. 2014. Assembly of complex plant – fungus networks. Nature Communications 5: 5273.
Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, et al. 2018. Core microbiomes for sustainable agroecosystems. Nature Plants 4: 247–57.
Toju H, Sato H. 2018. Root-associated fungi shared between arbuscular mycorrhizal and ectomycorrhizal conifers in a temperate forest. Frontiers in Microbiology 9: 433.
Toju H, Yamamoto S, Tanabe AS, Hayakawa T, Ishii HS. 2016. Network modules and hubs in plant-root fungal biomes. Journal of the Royal Society Interface 13: 20151097.
Tolkien JRR. 2014. The Lord of the Rings. London, UK: Harper Collins.
Tornberg K, Olsson S. 2002. Detection of hydroxyl radicals produced by wood-decomposing fungi. FEMS Microbiology Ecology 40: 13–20.
Torri L, Migliorini P, Masoero G. 2013. Sensory test vs. electronic nose and/or image analysis of whole bread produced with old and modern wheat varieties adjuvanted by means of the mycorrhizal factor. Food Research International 54: 1400–408.
Toyota M, Spencer D, Sawai-Toyota S, Jiaqi W, Zhang T, Koo AJ, Howe GA, Gilroy S. 2018. Glutamate triggers long-distance, calcium-based plant defense signaling. Science 361: 1112–115.
Trappe J. 2015. “Foreword.” In Mycorrhizal Networks. Horton T., ed. Springer International Publishing.
Trappe JM. 2005. A. B. Frank and mycorrhizae: the challenge to evolutionary and ecologic theory. Mycorrhiza 15: 277–81.
Trewavas A. 2016. Intelligence, Cognition, and Language of Green Plants. Frontiers in Psychology 7: 588.
Trewavas A. 2014. Plant Behaviour and Intelligence. Oxford, UK: Oxford University Press.
Trewavas A. 2007. Response to Alpi et al.: Plant neurobiology – all metaphors have value. Trends in Plant Science 12: 231–33.
Trivedi DK, Sinclair E, Xu Y, Sarkar D, Walton-Doyle C, Liscio C, Banks P, Milne J, Silverdale M, Kunath T, et al. 2019. Discovery of volatile biomarkers of Parkinson’s disease from sebum. ACS Central Science 5: 599–606.
Tsing AL. 2015. The Mushroom at the End of the World. Princeton, NJ: Princeton University Press.
Tuovinen V, Ekman S, Thor G, Vanderpool D, Spribille T, Johannesson H. 2019. Two basidiomycete fungi in the cortex of wolf lichens. Current Biology 29: 476–83.
Tyne D, Manson AL, Huycke MM, Karanicolas J, Earl AM, Gilmore MS. 2019. Impact of antibiotic treatment and host innate immune pressure on enterococcal adaptation in the human bloodstream. Science Translational Medicine 11: eaat8418.
Umehata H, Fumagalli M, Smail I, Matsuda Y, Swinbank AM, Cantalupo S, Sykes C, Ivison RJ, Steidel CC, Shapley AE, et al. 2019. Gas filaments of the cosmic web located around active galaxies in a protocluster. Science 366: 97–100.
Vadder F, Grasset E, Holm L, Karsenty G, Macpherson AJ, Olofsson LE, Bäckhed F. 2018. Gut microbiota regulates maturation of the adult enteric nervous system via enteric serotonin networks. Proceedings of the National Academy of Sciences 115: 6458–463.
Vahdatzadeh M, Deveau A, Splivallo R. 2015. The role of the microbiome of truffles in aroma formation: a meta-analysis approach. Applied and Environmental Microbiology 81: 6946–952.
Vajda V, McLoughlin S. 2004. Fungal proliferation at the cretaceous-tertiary boundary. Science 303: 1489–489.
Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, et al. 2019. The neuroactive potential of the human gut microbiota in quality of life and depression. Nature Microbiology: 623–32.
van Delft FC, Ipolitti G, Nicolau DV, Perumal A, Kašpar O, Kheireddine S, Wachsmann-Hogiu S, Nicolau DV. 2018. Something has to give: scaling combinatorial computing by biological agents exploring physical networks encoding NP-complete problems. Journal of the Royal Society Interface Focus 8: 20180034.
van der Heijden MG. 2016. Underground networking. Science 352: 290–91.
van der Heijden MG, Bardgett RD, Straalen NM. 2008. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecology Letters 11: 296–310.
van der Heijden MG, Dombrowski N, Schlaeppi K. 2017. Continuum of root-fungal symbioses for plant nutrition. Proceedings of the National Academy of Sciences 114: 11574–576.
van der Heijden MG, Horton TR. 2009. Socialism in soil? The importance of mycorrhizal fungal networks for facilitation in natural ecosystems. Journal of Ecology 97: 1139–150.
van der Heijden MG, Walder F. 2016. Reply to “Misconceptions on the application of biological market theory to the mycorrhizal symbiosis.” Nature Plants 2: 16062.
van der Linde S, Suz LM, Orme DC, Cox F, Andreae H, Asi E, Atkinson B, Benham S, Carroll C, Cools N, et al. 2018. Environment and host as large-scale controls of ectomycorrhizal fungi. Nature 558: 243–48.
Vannini C, Carpentieri A, Salvioli A, Novero M, Marsoni M, Testa L, Pinto M, Amoresano A, Ortolani F, Bracale M, et al. 2016. An interdomain network: the endobacterium of a mycorrhizal fungus promotes antioxidative responses in both fungal and plant hosts. New Phytologist 211: 265–75.
Van Tyne D, Manson AL, Huycke MM, Karanicolas J, Earl AM, Gilmore MS. 2019. Impact of antibiotic treatment and host innate immune pressure on enterococcal adaptation in the human bloodstream. Science Translational Medicine 487: eaat8418.
Venner S, Feschotte C, Biémont C. 2009. Dynamics of transposable elements: towards a community ecology of the genome. Trends in Genetics 25: 317–23.
Verbruggen E, Röling WF, Gamper HA, Kowalchuk GA, Verhoef HA, van der Heijden MG. 2010. Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils. New Phytologist 186: 968–79.
Vetter W, Roberts D. 2007. Revisiting the organohalogens associated with 1979-samples of Brazilian bees (Eufriesea purpurata). Science of the Total Environment 377: 371–77.
Vita F, Taiti C, Pompeiano A, Bazihizina N, Lucarotti V, Mancuso S, Alpi A. 2015. Volatile organic compounds in truffle (Tuber magnatum Pico): comparison of samples from different regions of Italy and from different seasons. Scientific Reports 5: 12629.
Viveiros de Castro E. 2004. Exchanging perspectives: the transformation of objects into subjects in amerindian ontologies. Common Knowledge: 463–84.
von Bertalanffy L. 1933. Modern Theories of Development: An Introduction to Theoretical Biology. London, UK: Humphrey Milford.
Wadley G, Hayden B. 2015. Pharmacological influences on the Neolithic Transition. Journal of Ethnobiology 35: 566–84.
Wagg C, Bender FS, Widmer F, van der Heijden MG. 2014. Soil biodiversity and soil community composition determine ecosystem multifunctionality. Proceedings of the National Academy of Sciences 111: 5266–270.
Wainwright M. 1989a. Moulds in ancient and more recent medicine. Mycologist 3: 21–23.
Wainwright M. 1989b. Moulds in Folk Medicine. Folklore 100: 162–66.
Wainwright M, Rally L, Ali T. 1992. The scientific basis of mould therapy. Mycologist 6: 108–10.
Walder F, Niemann H, Natarajan M, Lehmann MF, Boller T, Wiemken A. 2012. Mycorrhizal networks: common goods of plants shared under unequal terms of trade. Plant Physiology 159: 789–97.
Walder F, van der Heijden MG. 2015. Regulation of resource exchange in the arbuscular mycorrhizal symbiosis. Nature Plants 1: 15159.
Waller LP, Felten J, Hiiesalu I, Vogt-Schilb H. 2018. Sharing resources for mutual benefit: crosstalk between disciplines deepens the understanding of mycorrhizal symbioses across scales. New Phytologist 217: 29–32.
Wang B, Yeun L, Xue J, Liu Y, Ané J, Qiu Y. 2010. Presence of three mycorrhizal genes in the common ancestor of land plants suggests a key role of mycorrhizas in the colonization of land by plants. New Phytologist 186: 514–25.
Wasson G, Hofmann A, Ruck C. 2009. The Road to Eleusis: Unveiling the Secret of the Mysteries. Berkeley, CA: North Atlantic Books.
Wasson G, Kramrisch S, Ott J, Ruck C. 1986. Persephone’s Quest: Entheogens and the Origins of Religion. New Haven, CT: Yale University Press.
Wasson VP, Wasson G. 1957. Mushrooms, Russia and History. New York, NY: Pantheon Books, Inc.
Watanabe S, Tero A, Takamatsu A, Nakagaki T. 2011. Traffic optimization in railroad networks using an algorithm mimicking an amoeba-like organism, Physarum plasmodium. Biosystems 105: 225–32.
Watkinson SC, Boddy L, Money N. 2015. The Fungi. London, UK: Academic Press.
Watts J. 2018. Scientists identify vast underground ecosystem containing billions of micro-organisms. The Guardian: www.theguardian.com/science/2018/dec/10/tread-softly-because-you-tread-on-23bn-tonnes-of-micro-organisms [accessed October 29, 2019].
Watts-Williams SJ, Cavagnaro TR. 2014. Nutrient interactions and arbuscular mycorrhizas: a meta-analysis of a mycorrhiza-defective mutant and wild-type tomato genotype pair. Plant and Soil 384: 79–92.
Wellman CH, Strother PK. 2015. The terrestrial biota prior to the origin of land plants (embryophytes): a review of the evidence. Palaeontology 58: 601–27.
Weremijewicz J, da Sternberg L, Janos DP. 2016. Common mycorrhizal networks amplify competition by preferential mineral nutrient allocation to large host plants. New Phytologist 212: 461–71.
Werner GD, Kiers TE. 2015. Partner selection in the mycorrhizal mutualism. New Phytologist 205: 1437–442.
Werner GD, Strassmann JE, Ivens AB, Engelmoer DJ, Verbruggen E, Queller DC, Noë R, Johnson N, Hammerstein P, Kiers TE. 2014. Evolution of microbial markets. Proceedings of the National Academy of Sciences 111: 1237–244.
Werrett S. 2019. Thrifty Science: Making the Most of Materials in the History of Experiment. Chicago, IL: University of Chicago Press.
West M. 2019. Putting the “I” in science. Nature: www.nature.com/articles/d41586-019-03051-z [accessed October 29, 2019].
Westerhoff HV, Brooks AN, Simeonidis E, García-Contreras R, He F, Boogerd FC, Jackson VJ, Goncharuk V, Kolodkin A. 2014. Macromolecular networks and intelligence in microorganisms. Frontiers in Microbiology 5: 379.
Weyrich LS, Duchene S, Soubrier J, Arriola L, Llamas B, Breen J, Morris AG, Alt KW, Caramelli D, Dresely V, et al. 2017. Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature 544: 357–61.
Whiteside MD, Werner GDA, Caldas VEA, Van’t Padje A, Dupin SE, Elbers B, Bakker M, Wyatt GAK, Klein M, Hink MA, et al. 2019. Mycorrhizal fungi respond to resource inequality by moving phosphorus from rich to poor patches across networks. Current Biology 29: 2043–50.
Whittaker R. 1969. New Concepts of Kingdoms of Organisms. Science 163: 150–60.
Wiens F, Zitzmann A, Lachance M-A, Yegles M, Pragst F, Wurst FM, von Holst D, Guan S, Spanagel R. 2008. Chronic intake of fermented floral nectar by wild treeshrews. Proceedings of the National Academy of Sciences 105: 10426–431.
Wilkinson DM. 1998. The evolutionary ecology of mycorrhizal networks. Oikos 82: 407–10.
Willerslev R. 2007. Soul Hunters: Hunting, Animism, and Personhood among the Siberian Yukaghirs. Berkeley, CA: University of California Press.
Wilson GW, Rice CW, Rillig MC, Springer A, Hartnett DC. 2009. Soil aggregation and carbon sequestration are tightly correlated with the abundance of arbuscular mycorrhizal fungi: results from long-term field experiments. Ecology Letters 12: 452–61.
Winkelman MJ. 2017. The mechanisms of psychedelic visionary experiences: hypotheses from evolutionary psychology. Frontiers in Neuroscience 11: 539.
Wipf D, Krajinski F, Tuinen D, Recorbet G, Courty P. 2019. Trading on the arbuscular mycorrhiza market: from arbuscules to common mycorrhizal networks. New Phytologist 223: 1127–142.
Wisecaver JH, Slot JC, Rokas A. 2014. The evolution of fungal metabolic pathways. PLOS Genetics 10: e1004816.
Witt P. 1971. Drugs alter web-building of spiders: a review and evaluation. Behavioral Science 16: 98–113.
Wolfe BE, Husband BC, Klironomos JN. 2005. Effects of a belowground mutualism on an aboveground mutualism. Ecology Letters 8: 218–23.
Wright CK, Wimberly MC. 2013. Recent land use change in the Western Corn Belt threatens grasslands and wetlands. Proceedings of the National Academy of Sciences 110: 4134–139.
Wulf A. 2015. The Invention of Nature. New York, NY: Alfred A. Knopf.
Wyatt GA, Kiers TE, Gardner A, West SA. 2014. A biological market analysis of the plant-mycorrhizal symbiosis. Evolution 68: 2603–618.
Yano JM, Yu K, Donaldson GP, Shastri GG, Ann P, Ma L, Nagler CR, Ismagilov RF, Masmanian SK, Hsiao EY. 2015. Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis. Cell 161: 264–76.
Yon D. 2019. Now You See It. Quanta: aeon.co/essays/how-our-brain-sculpts-experience-in-line-with-our-expectations? [accessed October 29, 2019].
Yong E. 2014. The Guts That Scrape The Skies. National Geographic: www.nationalgeographic.com/science/phenomena/2014/09/23/the-guts-that-scrape-the-skies/ [accessed October 29, 2019].
Yong E. 2017. How the Zombie Fungus Takes Over Ants’ Bodies to Control Their Minds. The Atlantic: www.theatlantic.com/science/archive/2017/11/how-the-zombie-fungus-takes-over-ants-bodies-to-control-their-minds/545864/ [accessed October 29, 2019].
Yong E. 2016. I Contain Multitudes: The Microbes Within Us and a Grander View of Life. New York, NY: Ecco Press.
Yong E. 2018. This Parasite Drugs Its Hosts With the Psychedelic Chemical in Shrooms. The Atlantic: www.theatlantic.com/science/archive/2018/07/massospora-parasite-drugs-its-hosts/566324/ [accessed October 29, 2019].
Yong E. 2019. The Worst Disease Ever Recorded. The Atlantic: www.theatlantic.com/science/archive/2019/03/bd-frogs-apocalypse-disease/585862/ [accessed October 29, 2019].
Young RM. 1985. Darwin’s Metaphor. Cambridge, UK: Cambridge University Press.
Yuan X, Xiao S, Taylor TN. 2005. Lichen-like symbiosis 600 million years ago. Science 308: 1017–20.
Yun-Chang W. 1985. Mycology in Ancient China. Mycologist 1: 59–61.
Zabinski CA, Bunn RA. 2014. “Function of Mycorrhizae in Extreme Environments.” In Mycorrhizal Fungi: Use in Sustainable Agriculture and Land Restoration. Solaiman Z, Abbott L, Varma A, eds. Springer International Publishing, pp. 201–14.
Zhang MM, Poulsen M, Currie CR. 2007. Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants. The ISME Journal 1: 313–20.
Zhang S, Lehmann A, Zheng W, You Z, Rillig MC. 2019. Arbuscular mycorrhizal fungi increase grain yields: a meta-analysis. New Phytologist 222: 543–55.
Zhang Y, Kastman EK, Guasto JS, Wolfe BE. 2018. Fungal networks shape dynamics of bacterial dispersal and community assembly in cheese rind microbiomes. Nature Communications 9: 336.
Zheng C, Ji B, Zhang J, Zhang F, Bever JD. 2015. Shading decreases plant carbon preferential allocation towards the most beneficial mycorrhizal mutualist. New Phytologist 205: 361–68.
Zheng P, Zeng B, Zhou C, Liu M, Fang Z, Xu X, Zeng L, Chen J, Fan S, Du X, et al. 2016. Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism. Molecular Psychiatry 21: 786–96.
Zhu K, McCormack LM, Lankau RA, Egan FJ, Wurzburger N. 2018. Association of ectomycorrhizal trees with high carbon-to-nitrogen ratio soils across temperate forests is driven by smaller nitrogen not larger carbon stocks. Journal of Ecology 106: 524–35.
Zhu L, Aono M, Kim S-J, Hara M. 2013. Amoeba-based computing for traveling salesman problem: Long-term correlations between spatially separated individual cells of Physarum polycephalum. Biosystems 112: 1–10.
Zobel M. 2018. Eltonian niche width determines range expansion success in ectomycorrhizal conifers. New Phytologist 220: 947–49.
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